Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSW16_RS24360 Genome accession   NZ_CP113097
Coordinates   5292515..5293066 (-) Length   183 a.a.
NCBI ID   WP_012316509.1    Uniprot ID   A0A3R8V1N6
Organism   Pseudomonas putida strain WYTS.T61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5287515..5298066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSW16_RS24350 (OSW16_24350) thiC 5288628..5290514 (-) 1887 WP_267819146.1 phosphomethylpyrimidine synthase ThiC -
  OSW16_RS24355 (OSW16_24355) - 5290939..5292372 (+) 1434 WP_241806272.1 TolC family outer membrane protein -
  OSW16_RS24360 (OSW16_24360) ssb 5292515..5293066 (-) 552 WP_012316509.1 single-stranded DNA-binding protein Machinery gene
  OSW16_RS24365 (OSW16_24365) - 5293076..5294470 (-) 1395 WP_241806273.1 MFS transporter -
  OSW16_RS24370 (OSW16_24370) uvrA 5294600..5297434 (+) 2835 WP_241806274.1 excinuclease ABC subunit UvrA -
  OSW16_RS24375 (OSW16_24375) bfr 5297502..5297966 (-) 465 WP_012316512.1 bacterioferritin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20421.52 Da        Isoelectric Point: 5.9312

>NTDB_id=760183 OSW16_RS24360 WP_012316509.1 5292515..5293066(-) (ssb) [Pseudomonas putida strain WYTS.T61]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAPRPQQAQQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=760183 OSW16_RS24360 WP_012316509.1 5292515..5293066(-) (ssb) [Pseudomonas putida strain WYTS.T61]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGTTGCTCGGCGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAAGGTGGTGGTAACAACTACA
ACCAGGGTGGCCAGCAGCAACAGTACAACCAGGCGCCGCCACGTCAGCAGGCCCCACGCCCGCAACAGGCCCAGCAGCGC
CCTGCGCCGCAACAGCCCGCGCCGCAGCCGGCTGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8V1N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.595

100

0.552
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.514
  ssb Neisseria gonorrhoeae MS11

49.189

100

0.497
  ssb Neisseria meningitidis MC58

47.778

98.361

0.47