Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7I93_RS03750 Genome accession   NZ_CP124658
Coordinates   773185..773682 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2022CK-00068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 768185..778682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I93_RS03735 (P7I93_03735) bfr 768193..768657 (+) 465 WP_003093668.1 bacterioferritin -
  P7I93_RS03740 (P7I93_03740) uvrA 768729..771566 (-) 2838 WP_023092379.1 excinuclease ABC subunit UvrA Machinery gene
  P7I93_RS03745 (P7I93_03745) - 771780..773168 (+) 1389 WP_023092380.1 MFS transporter -
  P7I93_RS03750 (P7I93_03750) ssb 773185..773682 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  P7I93_RS03755 (P7I93_03755) pchA 773771..775201 (-) 1431 WP_023092381.1 isochorismate synthase PchA -
  P7I93_RS03760 (P7I93_03760) pchB 775198..775503 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  P7I93_RS03765 (P7I93_03765) pchC 775503..776258 (-) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -
  P7I93_RS03770 (P7I93_03770) pchD 776255..777898 (-) 1644 WP_023092382.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=760134 P7I93_RS03750 WP_003114685.1 773185..773682(+) (ssb) [Pseudomonas aeruginosa strain 2022CK-00068]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=760134 P7I93_RS03750 WP_003114685.1 773185..773682(+) (ssb) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515