Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P7I95_RS23280 Genome accession   NZ_CP124655
Coordinates   4876845..4877174 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2022CK-00096     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4871845..4882174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I95_RS23265 (P7I95_23265) uvrB 4873232..4875244 (-) 2013 WP_023095364.1 excinuclease ABC subunit UvrB Machinery gene
  P7I95_RS23270 (P7I95_23270) - 4875432..4876628 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  P7I95_RS23280 (P7I95_23280) comEA/comE1 4876845..4877174 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  P7I95_RS23285 (P7I95_23285) - 4877365..4879194 (-) 1830 WP_282425998.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P7I95_RS23290 (P7I95_23290) - 4879222..4880238 (+) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  P7I95_RS23295 (P7I95_23295) - 4880213..4880518 (+) 306 WP_282425999.1 hypothetical protein -
  P7I95_RS23300 (P7I95_23300) - 4880605..4881057 (+) 453 WP_229997692.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  P7I95_RS23305 (P7I95_23305) - 4881110..4882093 (+) 984 WP_013973047.1 IS5-like element IS2000 family transposase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=759994 P7I95_RS23280 WP_003091430.1 4876845..4877174(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2022CK-00096]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=759994 P7I95_RS23280 WP_003091430.1 4876845..4877174(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2022CK-00096]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385