Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSH15_RS02475 Genome accession   NZ_CP113074
Coordinates   503194..504012 (+) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498194..509012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH15_RS02440 (OSH15_02440) - 498776..498906 (-) 131 Protein_468 hypothetical protein -
  OSH15_RS02445 (OSH15_02445) rpoZ 498945..499223 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH15_RS02450 (OSH15_02450) gmk 499296..499925 (-) 630 WP_000015937.1 guanylate kinase -
  OSH15_RS02455 (OSH15_02455) ispH 500048..500998 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH15_RS02460 (OSH15_02460) fimU 501168..501641 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  OSH15_RS02465 (OSH15_02465) pilV 501635..502195 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH15_RS02470 (OSH15_02470) pilW 502196..503197 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  OSH15_RS02475 (OSH15_02475) pilX 503194..504012 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH15_RS02480 (OSH15_02480) pilY1 504024..507878 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH15_RS02485 (OSH15_02485) pilY2 507891..508373 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH15_RS02490 (OSH15_02490) pilE 508370..508795 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=759909 OSH15_RS02475 WP_000149378.1 503194..504012(+) (pilX) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759909 OSH15_RS02475 WP_000149378.1 503194..504012(+) (pilX) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989