Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSH15_RS02485 Genome accession   NZ_CP113074
Coordinates   507891..508373 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502891..513373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH15_RS02475 (OSH15_02475) pilX 503194..504012 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH15_RS02480 (OSH15_02480) pilY1 504024..507878 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH15_RS02485 (OSH15_02485) pilY2 507891..508373 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH15_RS02490 (OSH15_02490) pilE 508370..508795 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene
  OSH15_RS02495 (OSH15_02495) rpsP 508942..509193 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSH15_RS02500 (OSH15_02500) rimM 509213..509761 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSH15_RS02505 (OSH15_02505) trmD 509807..510547 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSH15_RS02510 (OSH15_02510) rplS 510755..511123 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSH15_RS02515 (OSH15_02515) - 511175..512116 (-) 942 WP_085943440.1 triacylglycerol lipase -
  OSH15_RS02520 (OSH15_02520) - 512231..513265 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=759911 OSH15_RS02485 WP_001046417.1 507891..508373(+) (pilY2) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759911 OSH15_RS02485 WP_001046417.1 507891..508373(+) (pilY2) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444