Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OSH15_RS02460 Genome accession   NZ_CP113074
Coordinates   501168..501641 (+) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496168..506641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH15_RS02435 (OSH15_02435) - 496631..498736 (-) 2106 WP_001117590.1 HD domain-containing protein -
  OSH15_RS02440 (OSH15_02440) - 498776..498906 (-) 131 Protein_468 hypothetical protein -
  OSH15_RS02445 (OSH15_02445) rpoZ 498945..499223 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH15_RS02450 (OSH15_02450) gmk 499296..499925 (-) 630 WP_000015937.1 guanylate kinase -
  OSH15_RS02455 (OSH15_02455) ispH 500048..500998 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH15_RS02460 (OSH15_02460) fimU 501168..501641 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  OSH15_RS02465 (OSH15_02465) pilV 501635..502195 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH15_RS02470 (OSH15_02470) pilW 502196..503197 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  OSH15_RS02475 (OSH15_02475) pilX 503194..504012 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=759906 OSH15_RS02460 WP_001214058.1 501168..501641(+) (fimU) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=759906 OSH15_RS02460 WP_001214058.1 501168..501641(+) (fimU) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987