Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OSH15_RS02465 Genome accession   NZ_CP113074
Coordinates   501635..502195 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496635..507195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH15_RS02440 (OSH15_02440) - 498776..498906 (-) 131 Protein_468 hypothetical protein -
  OSH15_RS02445 (OSH15_02445) rpoZ 498945..499223 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH15_RS02450 (OSH15_02450) gmk 499296..499925 (-) 630 WP_000015937.1 guanylate kinase -
  OSH15_RS02455 (OSH15_02455) ispH 500048..500998 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH15_RS02460 (OSH15_02460) fimU 501168..501641 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  OSH15_RS02465 (OSH15_02465) pilV 501635..502195 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH15_RS02470 (OSH15_02470) pilW 502196..503197 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  OSH15_RS02475 (OSH15_02475) pilX 503194..504012 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=759907 OSH15_RS02465 WP_002194578.1 501635..502195(+) (pilV) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=759907 OSH15_RS02465 WP_002194578.1 501635..502195(+) (pilV) [Acinetobacter baumannii strain ATCC17978 TnAraC-H0N27_12600]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTACGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414