Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7I92_RS03540 Genome accession   NZ_CP124654
Coordinates   731875..732372 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2021CK-01851     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 726875..737372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I92_RS03525 (P7I92_03525) bfr 726883..727347 (+) 465 WP_003093668.1 bacterioferritin -
  P7I92_RS03530 (P7I92_03530) uvrA 727419..730256 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  P7I92_RS03535 (P7I92_03535) - 730470..731858 (+) 1389 WP_003103910.1 MFS transporter -
  P7I92_RS03540 (P7I92_03540) ssb 731875..732372 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  P7I92_RS03545 (P7I92_03545) pchA 732459..733889 (-) 1431 WP_190262286.1 isochorismate synthase PchA -
  P7I92_RS03550 (P7I92_03550) pchB 733886..734191 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  P7I92_RS03555 (P7I92_03555) pchC 734191..734946 (-) 756 WP_019486336.1 pyochelin biosynthesis editing thioesterase PchC -
  P7I92_RS03560 (P7I92_03560) pchD 734943..736586 (-) 1644 WP_016852424.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=759832 P7I92_RS03540 WP_003114685.1 731875..732372(+) (ssb) [Pseudomonas aeruginosa strain 2021CK-01851]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=759832 P7I92_RS03540 WP_003114685.1 731875..732372(+) (ssb) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515