Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSH16_RS01590 Genome accession   NZ_CP113072
Coordinates   346031..346513 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341031..351513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS01580 (OSH16_01580) pilX 341334..342152 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH16_RS01585 (OSH16_01585) pilY1 342164..346018 (+) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH16_RS01590 (OSH16_01590) pilY2 346031..346513 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH16_RS01595 (OSH16_01595) pilE 346510..346935 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH16_RS01600 (OSH16_01600) rpsP 347082..347333 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSH16_RS01605 (OSH16_01605) rimM 347353..347901 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSH16_RS01610 (OSH16_01610) trmD 347947..348687 (+) 741 WP_168726698.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSH16_RS01615 (OSH16_01615) rplS 348895..349263 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSH16_RS01620 (OSH16_01620) - 349316..350257 (-) 942 WP_103235966.1 triacylglycerol lipase -
  OSH16_RS01625 (OSH16_01625) - 350372..351406 (-) 1035 WP_002027627.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=759810 OSH16_RS01590 WP_001046417.1 346031..346513(+) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759810 OSH16_RS01590 WP_001046417.1 346031..346513(+) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444