Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P7I82_RS29480 Genome accession   NZ_CP124652
Coordinates   6232168..6232893 (+) Length   241 a.a.
NCBI ID   WP_004365178.1    Uniprot ID   A0A0H2ZL31
Organism   Pseudomonas aeruginosa strain 2020CK-00443     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6227168..6237893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I82_RS29450 (P7I82_29450) - 6227288..6228166 (-) 879 WP_023095131.1 allophanate hydrolase subunit 1 -
  P7I82_RS29455 (P7I82_29455) - 6228168..6229544 (-) 1377 WP_023095130.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  P7I82_RS29460 (P7I82_29460) - 6229555..6229803 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  P7I82_RS29465 (P7I82_29465) - 6229880..6230638 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  P7I82_RS29470 (P7I82_29470) - 6230756..6231682 (+) 927 WP_023874849.1 LysR family transcriptional regulator -
  P7I82_RS29475 (P7I82_29475) - 6231736..6232029 (+) 294 WP_003084806.1 hypothetical protein -
  P7I82_RS29480 (P7I82_29480) comF 6232168..6232893 (+) 726 WP_004365178.1 ComF family protein Machinery gene
  P7I82_RS29485 (P7I82_29485) - 6232935..6233255 (+) 321 WP_004365177.1 YfiM family lipoprotein -
  P7I82_RS29490 (P7I82_29490) - 6233323..6234081 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  P7I82_RS29495 (P7I82_29495) - 6234143..6235117 (+) 975 WP_023095128.1 serine/threonine protein kinase -
  P7I82_RS29500 (P7I82_29500) rarD 6235320..6236216 (+) 897 WP_003121788.1 EamA family transporter RarD -
  P7I82_RS29505 (P7I82_29505) - 6236906..6237421 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27019.49 Da        Isoelectric Point: 11.0325

>NTDB_id=759808 P7I82_RS29480 WP_004365178.1 6232168..6232893(+) (comF) [Pseudomonas aeruginosa strain 2020CK-00443]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=759808 P7I82_RS29480 WP_004365178.1 6232168..6232893(+) (comF) [Pseudomonas aeruginosa strain 2020CK-00443]
ATGTCATTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCTTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382