Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSH16_RS01580 Genome accession   NZ_CP113072
Coordinates   341334..342152 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336334..347152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS01545 (OSH16_01545) - 336917..337046 (-) 130 Protein_294 hypothetical protein -
  OSH16_RS01550 (OSH16_01550) rpoZ 337085..337363 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH16_RS01555 (OSH16_01555) gmk 337436..338065 (-) 630 WP_000015937.1 guanylate kinase -
  OSH16_RS01560 (OSH16_01560) ispH 338188..339138 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH16_RS01565 (OSH16_01565) fimU 339308..339781 (+) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH16_RS01570 (OSH16_01570) pilV 339775..340335 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH16_RS01575 (OSH16_01575) pilW 340336..341337 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH16_RS01580 (OSH16_01580) pilX 341334..342152 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH16_RS01585 (OSH16_01585) pilY1 342164..346018 (+) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH16_RS01590 (OSH16_01590) pilY2 346031..346513 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH16_RS01595 (OSH16_01595) pilE 346510..346935 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=759808 OSH16_RS01580 WP_000149374.1 341334..342152(+) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759808 OSH16_RS01580 WP_000149374.1 341334..342152(+) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993