Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P7I82_RS29875 Genome accession   NZ_CP124652
Coordinates   6330357..6330722 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 2020CK-00443     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6325357..6335722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I82_RS29860 (P7I82_29860) pilK 6326701..6327576 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  P7I82_RS29865 (P7I82_29865) pilJ 6327637..6329685 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  P7I82_RS29870 (P7I82_29870) - 6329770..6330306 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  P7I82_RS29875 (P7I82_29875) pilH 6330357..6330722 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  P7I82_RS29880 (P7I82_29880) pilG 6330769..6331176 (-) 408 WP_282426010.1 twitching motility response regulator PilG Regulator
  P7I82_RS29885 (P7I82_29885) gshB 6331431..6332384 (+) 954 WP_003100943.1 glutathione synthase -
  P7I82_RS29890 (P7I82_29890) - 6332531..6333424 (+) 894 WP_003084580.1 TonB family protein -
  P7I82_RS29895 (P7I82_29895) - 6333473..6334042 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  P7I82_RS29900 (P7I82_29900) ruvX 6334042..6334476 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  P7I82_RS29905 (P7I82_29905) pyrR 6334588..6335100 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=759811 P7I82_RS29875 WP_003084587.1 6330357..6330722(-) (pilH) [Pseudomonas aeruginosa strain 2020CK-00443]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=759811 P7I82_RS29875 WP_003084587.1 6330357..6330722(-) (pilH) [Pseudomonas aeruginosa strain 2020CK-00443]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364