Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   OSH16_RS01595 Genome accession   NZ_CP113072
Coordinates   346510..346935 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341510..351935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH16_RS01585 (OSH16_01585) pilY1 342164..346018 (+) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH16_RS01590 (OSH16_01590) pilY2 346031..346513 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH16_RS01595 (OSH16_01595) pilE 346510..346935 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH16_RS01600 (OSH16_01600) rpsP 347082..347333 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSH16_RS01605 (OSH16_01605) rimM 347353..347901 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSH16_RS01610 (OSH16_01610) trmD 347947..348687 (+) 741 WP_168726698.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSH16_RS01615 (OSH16_01615) rplS 348895..349263 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSH16_RS01620 (OSH16_01620) - 349316..350257 (-) 942 WP_103235966.1 triacylglycerol lipase -
  OSH16_RS01625 (OSH16_01625) - 350372..351406 (-) 1035 WP_002027627.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=759811 OSH16_RS01595 WP_000788342.1 346510..346935(+) (pilE) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=759811 OSH16_RS01595 WP_000788342.1 346510..346935(+) (pilE) [Acinetobacter baumannii strain A118 DeltaH0N27_10820-30::kan]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518