NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	OSV61_RS09960	Genome accession	NZ_CP113069
Coordinates	2112788..2113471 (-)	Length	227 a.a.
NCBI ID	WP_277848004.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain 29D2
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2107788..2118471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSV61_RS09930 (OSV61_09930)	-	2108095..2108538 (-)	444	WP_001246675.1	SRPBCC family protein	-
OSV61_RS09935 (OSV61_09935)	tadA	2108608..2109111 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
OSV61_RS09940 (OSV61_09940)	-	2109118..2110242 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
OSV61_RS09945 (OSV61_09945)	ung	2110239..2110952 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
OSV61_RS09950 (OSV61_09950)	-	2111003..2111599 (-)	597	WP_000908454.1	6-carboxytetrahydropterin synthase	-
OSV61_RS09955 (OSV61_09955)	gspK	2111829..2112788 (-)	960	WP_065718577.1	type II secretion system minor pseudopilin GspK	-
OSV61_RS09960 (OSV61_09960)	xcpW	2112788..2113471 (-)	684	WP_277848004.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OSV61_RS09965 (OSV61_09965)	xcpV	2113488..2113868 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
OSV61_RS09970 (OSV61_09970)	-	2113858..2114412 (-)	555	WP_000841373.1	type II secretion system protein	-
OSV61_RS09975 (OSV61_09975)	-	2114422..2115030 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OSV61_RS09980 (OSV61_09980)	-	2115068..2115841 (-)	774	WP_000497298.1	TatD family hydrolase	-
OSV61_RS09985 (OSV61_09985)	-	2115859..2116200 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
OSV61_RS09990 (OSV61_09990)	-	2116212..2117192 (-)	981	WP_001075407.1	DNA polymerase III subunit delta'	-
OSV61_RS09995 (OSV61_09995)	kdsB	2117204..2117965 (-)	762	WP_000680695.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 227 a.a. Molecular weight: 25971.73 Da Isoelectric Point: 8.3219

                                >NTDB_id=759672 OSV61_RS09960 WP_277848004.1 2112788..2113471(-) (xcpW) [Acinetobacter baumannii strain 29D2]

MHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQILRDTL

QIIPLSANQDGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLSSTLLSQ

VDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 684 bp

                                >NTDB_id=759672 OSV61_RS09960 WP_277848004.1 2112788..2113471(-) (xcpW) [Acinetobacter baumannii strain 29D2]

ATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCGCGTCTCAGGATTTACTTT

GGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTTTCGATTACTTGCTCAAAG

TTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAAATTCTTCGTGATACTTTG

CAGATTATCCCTTTATCCGCAAACCAAGATGGTCAACTTCATCCAGCTTTAGAAATCGATAATCAAATTTTACGTTTTAG

CAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATCGTTATGATGCAGACCAAA

AAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCGAGTACTTTGTTAAGTCAA

GTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAATATTGATCCAACGAAACC

TAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATTATGAGTGGATTTATAGCT

TAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(77-206)

Prokaryotic N-terminal methylation motif (N_methyl)

(21-43)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	97.797	100	0.978

Detailed information NTG0759672