Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H7R23_RS01750 Genome accession   NZ_AP021936
Coordinates   371696..372169 (+) Length   157 a.a.
NCBI ID   WP_017481718.1    Uniprot ID   A0A9X3QJB9
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366696..377169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS01725 (WP2W18E11_03260) spoT 367158..369263 (-) 2106 WP_086355290.1 RelA/SpoT family protein -
  H7R23_RS01730 - 369282..369434 (-) 153 Protein_332 hypothetical protein -
  H7R23_RS01735 (WP2W18E11_03270) rpoZ 369473..369751 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  H7R23_RS01740 (WP2W18E11_03280) gmk 369824..370453 (-) 630 WP_086355291.1 guanylate kinase -
  H7R23_RS01745 (WP2W18E11_03290) ispH 370576..371526 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R23_RS01750 (WP2W18E11_03300) fimU 371696..372169 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  H7R23_RS01755 (WP2W18E11_03310) pilV 372163..372723 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  H7R23_RS01760 (WP2W18E11_03320) pilW 372723..373724 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  H7R23_RS01765 (WP2W18E11_03330) pilX 373721..374530 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16925.59 Da        Isoelectric Point: 7.7942

>NTDB_id=75963 H7R23_RS01750 WP_017481718.1 371696..372169(+) (fimU) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNNPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=75963 H7R23_RS01750 WP_017481718.1 371696..372169(+) (fimU) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGATGTTTCTATTAATCTGAATTCAACAGCTTTAAATAATCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879

Multiple sequence alignment