Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   H7R23_RS01760 Genome accession   NZ_AP021936
Coordinates   372723..373724 (+) Length   333 a.a.
NCBI ID   WP_017481717.1    Uniprot ID   A0A9X3QGF6
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367723..378724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS01730 - 369282..369434 (-) 153 Protein_332 hypothetical protein -
  H7R23_RS01735 (WP2W18E11_03270) rpoZ 369473..369751 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  H7R23_RS01740 (WP2W18E11_03280) gmk 369824..370453 (-) 630 WP_086355291.1 guanylate kinase -
  H7R23_RS01745 (WP2W18E11_03290) ispH 370576..371526 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R23_RS01750 (WP2W18E11_03300) fimU 371696..372169 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  H7R23_RS01755 (WP2W18E11_03310) pilV 372163..372723 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  H7R23_RS01760 (WP2W18E11_03320) pilW 372723..373724 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  H7R23_RS01765 (WP2W18E11_03330) pilX 373721..374530 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7R23_RS01770 (WP2W18E11_03340) pilY1 374542..378396 (+) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35814.49 Da        Isoelectric Point: 6.6395

>NTDB_id=75965 H7R23_RS01760 WP_017481717.1 372723..373724(+) (pilW) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=75965 H7R23_RS01760 WP_017481717.1 372723..373724(+) (pilW) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCAACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853

Multiple sequence alignment