Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   LDO80_RS06735 Genome accession   NZ_AP024933
Coordinates   1247174..1247647 (+) Length   157 a.a.
NCBI ID   WP_223965551.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA3-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242174..1252647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO80_RS06715 (TthAA37_13320) ilvN 1243149..1243661 (-) 513 WP_223965549.1 acetolactate synthase small subunit -
  LDO80_RS06720 (TthAA37_13330) ilvB 1243658..1245346 (-) 1689 WP_223965550.1 biosynthetic-type acetolactate synthase large subunit -
  LDO80_RS06725 (TthAA37_13340) - 1245502..1246482 (-) 981 WP_018461695.1 YpdA family putative bacillithiol disulfide reductase -
  LDO80_RS06730 (TthAA37_13350) pilA/pilA1 1246648..1247118 (+) 471 WP_143585821.1 GspH/FimT family protein Machinery gene
  LDO80_RS06735 (TthAA37_13360) pilA/pilA1 1247174..1247647 (+) 474 WP_223965551.1 GspH/FimT family protein Machinery gene
  LDO80_RS06740 (TthAA37_13370) pilA/pilA2 1247665..1248225 (+) 561 WP_267461250.1 type IV pilus modification PilV family protein Machinery gene
  LDO80_RS06745 (TthAA37_13380) pilA/pilA3 1248222..1248923 (+) 702 WP_224065290.1 PilW family protein Machinery gene
  LDO80_RS06750 (TthAA37_13390) comZ 1248934..1250610 (+) 1677 WP_223965554.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  LDO80_RS13220 - 1250828..1250942 (+) 115 Protein_1323 type IV pilin protein -
  LDO80_RS06760 (TthAA37_13410) - 1251625..1252005 (+) 381 WP_223968480.1 DUF1640 domain-containing protein -
  LDO80_RS06765 (TthAA37_13420) - 1252081..1252623 (+) 543 WP_223968482.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.28 Da        Isoelectric Point: 10.2283

>NTDB_id=75964 LDO80_RS06735 WP_223965551.1 1247174..1247647(+) (pilA/pilA1) [Thermus thermophilus strain AA3-7]
MKKPHGLSLVELVIVLAVLGVLLALGTGYLRSDRLAVNQAARSLAAQVTRARLEAIRRNTFVGLQFSTQGAGGYLLFEDA
NRDSLYDSGEPVIQRVVFGQGDWARVRLSAIEGPATLVFDPRGIPQGFAEAKVSLSNRAGTYSQEISISPQGRASLP

Nucleotide


Download         Length: 474 bp        

>NTDB_id=75964 LDO80_RS06735 WP_223965551.1 1247174..1247647(+) (pilA/pilA1) [Thermus thermophilus strain AA3-7]
ATGAAGAAGCCCCACGGCCTAAGCCTCGTAGAGCTCGTGATCGTCCTCGCCGTCCTGGGGGTCCTCCTGGCCCTGGGCAC
GGGCTACCTGCGCTCCGACCGCCTCGCCGTGAACCAGGCGGCCCGTTCCCTCGCGGCCCAGGTAACCCGAGCGAGGCTCG
AGGCCATCCGCCGCAACACCTTCGTGGGCCTCCAATTCAGCACCCAAGGCGCAGGGGGCTACCTCCTCTTTGAGGACGCC
AATCGCGATAGCCTCTACGACTCCGGGGAGCCCGTGATCCAAAGGGTGGTTTTTGGCCAAGGGGACTGGGCCCGGGTGCG
GCTCAGCGCCATTGAAGGCCCAGCAACCCTGGTCTTTGACCCCAGGGGCATACCCCAAGGCTTCGCCGAAGCCAAGGTAT
CCCTAAGCAACCGCGCCGGAACCTACTCCCAAGAGATCTCCATAAGCCCCCAAGGGAGGGCGAGCCTGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II transport protein GspH (GspH)

(40-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

56.693

80.892

0.459

Multiple sequence alignment