Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H7R23_RS01765 Genome accession   NZ_AP021936
Coordinates   373721..374530 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368721..379530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS01730 - 369282..369434 (-) 153 Protein_332 hypothetical protein -
  H7R23_RS01735 (WP2W18E11_03270) rpoZ 369473..369751 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  H7R23_RS01740 (WP2W18E11_03280) gmk 369824..370453 (-) 630 WP_086355291.1 guanylate kinase -
  H7R23_RS01745 (WP2W18E11_03290) ispH 370576..371526 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R23_RS01750 (WP2W18E11_03300) fimU 371696..372169 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  H7R23_RS01755 (WP2W18E11_03310) pilV 372163..372723 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  H7R23_RS01760 (WP2W18E11_03320) pilW 372723..373724 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  H7R23_RS01765 (WP2W18E11_03330) pilX 373721..374530 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7R23_RS01770 (WP2W18E11_03340) pilY1 374542..378396 (+) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  H7R23_RS01775 (WP2W18E11_03350) pilY2 378407..378889 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  H7R23_RS01780 (WP2W18E11_03360) pilE 378886..379311 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=75966 H7R23_RS01765 WP_017481716.1 373721..374530(+) (pilX) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=75966 H7R23_RS01765 WP_017481716.1 373721..374530(+) (pilX) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment