Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7R23_RS01050 Genome accession   NZ_AP021936
Coordinates   231950..232537 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 226950..237537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS01025 (WP2W18E11_01970) - 227026..227826 (-) 801 WP_017481793.1 SDR family NAD(P)-dependent oxidoreductase -
  H7R23_RS01030 (WP2W18E11_01980) - 227930..228301 (-) 372 WP_017481792.1 MerR family transcriptional regulator -
  H7R23_RS01035 (WP2W18E11_01990) tenA 228368..229042 (-) 675 WP_017481791.1 thiaminase II -
  H7R23_RS01040 (WP2W18E11_02000) - 229305..230387 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  H7R23_RS01045 (WP2W18E11_02010) yajR 230534..231898 (+) 1365 WP_182917737.1 MFS transporter -
  H7R23_RS01050 (WP2W18E11_02020) ssb 231950..232537 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  H7R23_RS01055 (WP2W18E11_02030) - 232579..232902 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  H7R23_RS01060 (WP2W18E11_02040) - 232899..233594 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  H7R23_RS01065 (WP2W18E11_02050) ydcN 233663..234211 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  H7R23_RS01070 (WP2W18E11_02060) - 234517..235959 (+) 1443 WP_086264744.1 amino acid permease -
  H7R23_RS01075 (WP2W18E11_02070) - 236024..237523 (-) 1500 WP_032004963.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=75956 H7R23_RS01050 WP_005804461.1 231950..232537(+) (ssb) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=75956 H7R23_RS01050 WP_005804461.1 231950..232537(+) (ssb) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGTAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment