Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   OS079_RS12990 Genome accession   NZ_CP113042
Coordinates   2577792..2578091 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain Seraphine     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572792..2583091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS079_RS12965 gcvPA 2574004..2575350 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OS079_RS12970 gcvT 2575370..2576461 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OS079_RS12975 - 2576620..2577144 (-) 525 WP_267837924.1 shikimate kinase -
  OS079_RS12980 - 2577134..2577280 (-) 147 WP_001789879.1 hypothetical protein -
  OS079_RS12985 comGF 2577377..2577874 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OS079_RS12990 comGE 2577792..2578091 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OS079_RS12995 comGD 2578078..2578524 (-) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  OS079_RS13000 comGC 2578502..2578813 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OS079_RS13005 comGB 2578827..2579897 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  OS079_RS13010 comGA 2579869..2580843 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  OS079_RS13015 - 2580895..2581518 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  OS079_RS13020 - 2581515..2581844 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OS079_RS13025 - 2581844..2582830 (-) 987 WP_000161314.1 ROK family glucokinase -
  OS079_RS13030 - 2582827..2583030 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=759422 OS079_RS12990 WP_000844413.1 2577792..2578091(-) (comGE) [Staphylococcus aureus strain Seraphine]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=759422 OS079_RS12990 WP_000844413.1 2577792..2578091(-) (comGE) [Staphylococcus aureus strain Seraphine]
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99