Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS091_RS14525 Genome accession   NZ_CP113037
Coordinates   2853878..2854381 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain Zilean     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2848878..2859381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS14490 - 2848918..2849181 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  OS091_RS14495 - 2849319..2849891 (-) 573 WP_000769719.1 PepSY domain-containing protein -
  OS091_RS14500 - 2850072..2850440 (-) 369 WP_000849172.1 YxeA family protein -
  OS091_RS14505 selX 2850809..2851420 (-) 612 WP_000473142.1 staphylococcal enterotoxin-like toxin X -
  OS091_RS14510 - 2851626..2852341 (+) 716 Protein_2743 tyrosine-type recombinase/integrase -
  OS091_RS14515 - 2852380..2853318 (+) 939 WP_078055966.1 Abi family protein -
  OS091_RS14520 rpsR 2853584..2853826 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  OS091_RS14525 ssbA 2853878..2854381 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  OS091_RS14530 rpsF 2854402..2854698 (-) 297 WP_001261460.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=759351 OS091_RS14525 WP_000934799.1 2853878..2854381(-) (ssbA) [Staphylococcus aureus strain Zilean]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=759351 OS091_RS14525 WP_000934799.1 2853878..2854381(-) (ssbA) [Staphylococcus aureus strain Zilean]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365