Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS090_RS15330 Genome accession   NZ_CP113018
Coordinates   2968328..2968831 (-) Length   167 a.a.
NCBI ID   WP_000934798.1    Uniprot ID   A0A0Z0SL74
Organism   Staphylococcus aureus strain Taliyah     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2963328..2973831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS15295 - 2963382..2963645 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  OS090_RS15300 - 2963783..2964355 (-) 573 WP_000769720.1 PepSY domain-containing protein -
  OS090_RS15305 - 2964536..2964904 (-) 369 WP_000849177.1 YxeA family protein -
  OS090_RS15310 selX 2965273..2965884 (-) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  OS090_RS15315 - 2966090..2966791 (+) 702 Protein_2946 tyrosine-type recombinase/integrase -
  OS090_RS15320 - 2966830..2967768 (+) 939 WP_267793780.1 Abi family protein -
  OS090_RS15325 rpsR 2968034..2968276 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  OS090_RS15330 ssbA 2968328..2968831 (-) 504 WP_000934798.1 single-stranded DNA-binding protein Machinery gene
  OS090_RS15335 rpsF 2968852..2969148 (-) 297 WP_267790183.1 30S ribosomal protein S6 -
  OS090_RS15340 - 2969392..2969583 (+) 192 WP_001052483.1 hypothetical protein -
  OS090_RS15345 ychF 2969669..2970766 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  OS090_RS15350 - 2970778..2970981 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  OS090_RS15355 - 2971011..2971892 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  OS090_RS15360 - 2972049..2972894 (-) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.18 Da        Isoelectric Point: 4.7305

>NTDB_id=759177 OS090_RS15330 WP_000934798.1 2968328..2968831(-) (ssbA) [Staphylococcus aureus strain Taliyah]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=759177 OS090_RS15330 WP_000934798.1 2968328..2968831(-) (ssbA) [Staphylococcus aureus strain Taliyah]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z0SL74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365