Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS082_RS15010 Genome accession   NZ_CP113007
Coordinates   2944749..2945252 (-) Length   167 a.a.
NCBI ID   WP_000934798.1    Uniprot ID   A0A0Z0SL74
Organism   Staphylococcus aureus strain Ryze     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2939749..2950252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS14975 - 2939803..2940066 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  OS082_RS14980 - 2940204..2940776 (-) 573 WP_000769720.1 PepSY domain-containing protein -
  OS082_RS14985 - 2940957..2941325 (-) 369 WP_000849177.1 YxeA family protein -
  OS082_RS14990 selX 2941694..2942305 (-) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  OS082_RS14995 - 2942511..2943212 (+) 702 Protein_2918 tyrosine-type recombinase/integrase -
  OS082_RS15000 - 2943251..2944189 (+) 939 WP_001822249.1 Abi family protein -
  OS082_RS15005 rpsR 2944455..2944697 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  OS082_RS15010 ssbA 2944749..2945252 (-) 504 WP_000934798.1 single-stranded DNA-binding protein Machinery gene
  OS082_RS15015 rpsF 2945273..2945569 (-) 297 WP_267790183.1 30S ribosomal protein S6 -
  OS082_RS15020 - 2945813..2946004 (+) 192 WP_001052483.1 hypothetical protein -
  OS082_RS15025 ychF 2946090..2947187 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  OS082_RS15030 - 2947199..2947402 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  OS082_RS15035 - 2947432..2948313 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  OS082_RS15040 - 2948470..2949315 (-) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.18 Da        Isoelectric Point: 4.7305

>NTDB_id=758998 OS082_RS15010 WP_000934798.1 2944749..2945252(-) (ssbA) [Staphylococcus aureus strain Ryze]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=758998 OS082_RS15010 WP_000934798.1 2944749..2945252(-) (ssbA) [Staphylococcus aureus strain Ryze]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z0SL74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365