Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS082_RS00035 Genome accession   NZ_CP113007
Coordinates   2442..2912 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus strain Ryze     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 238..13497 2442..2912 within 0


Gene organization within MGE regions


Location: 238..13497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS082_RS00010 - 238..495 (-) 258 WP_000111491.1 DUF3310 domain-containing protein -
  OS082_RS00015 - 495..867 (-) 373 Protein_2 SA1788 family PVL leukocidin-associated protein -
  OS082_RS00020 - 880..1284 (-) 405 WP_000401969.1 RusA family crossover junction endodeoxyribonuclease -
  OS082_RS00025 - 1293..1511 (-) 219 WP_000338528.1 hypothetical protein -
  OS082_RS00030 - 1518..2412 (-) 895 Protein_5 DnaD domain protein -
  OS082_RS00035 ssbA 2442..2912 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  OS082_RS00040 - 2913..3530 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  OS082_RS00045 - 3611..4531 (-) 921 WP_000180598.1 recombinase RecT -
  OS082_RS00050 - 4533..6476 (-) 1944 WP_000700555.1 AAA family ATPase -
  OS082_RS00055 - 6485..6748 (-) 264 WP_001205732.1 hypothetical protein -
  OS082_RS00060 - 6757..7017 (-) 261 WP_000291089.1 DUF1108 family protein -
  OS082_RS00065 - 7109..7270 (-) 162 WP_000066021.1 DUF1270 family protein -
  OS082_RS00070 - 7282..7545 (-) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  OS082_RS00075 - 7694..7793 (-) 100 Protein_14 hypothetical protein -
  OS082_RS00080 tscA 7833..8057 (-) 225 WP_000187184.1 type II toxin-antitoxin system antitoxin TscA -
  OS082_RS00085 - 8058..8825 (-) 768 WP_001002757.1 phage antirepressor Ant -
  OS082_RS00090 - 8825..9019 (-) 195 WP_000108122.1 helix-turn-helix domain-containing protein -
  OS082_RS00095 - 9282..9614 (+) 333 WP_001055143.1 helix-turn-helix domain-containing protein -
  OS082_RS00100 - 9631..10305 (+) 675 WP_000775187.1 ImmA/IrrE family metallo-endopeptidase -
  OS082_RS00105 - 10333..11058 (+) 726 WP_000661437.1 PH domain-containing protein -
  OS082_RS00110 - 11090..12022 (+) 933 WP_000392181.1 hypothetical protein -
  OS082_RS00115 - 12002..12181 (-) 180 WP_000337826.1 hypothetical protein -
  OS082_RS00120 - 12292..13497 (+) 1206 WP_000264186.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=758955 OS082_RS00035 WP_000934759.1 2442..2912(-) (ssbA) [Staphylococcus aureus strain Ryze]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=758955 OS082_RS00035 WP_000934759.1 2442..2912(-) (ssbA) [Staphylococcus aureus strain Ryze]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I7Y8V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365