Detailed information NTG0075894

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LDO10_RS02340
• Genome accession: NZ_AP024929
• Coordinates: 418447..419421 (-)
• Length: 324 a.a.
• NCBI ID: WP_024119065.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA2-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 413447..424421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO10_RS02320 (TthAA22_04510)	-	413703..414131 (+)	429	WP_011227910.1	hypothetical protein	-
LDO10_RS02325 (TthAA22_04520)	ftsH	414117..415973 (-)	1857	WP_143584724.1	ATP-dependent zinc metalloprotease FtsH	-
LDO10_RS02330 (TthAA22_04530)	-	416046..417398 (+)	1353	WP_014630116.1	tetratricopeptide repeat protein	-
LDO10_RS02335 (TthAA22_04540)	-	417419..418450 (-)	1032	WP_143584725.1	DUF4388 domain-containing protein	-
LDO10_RS02340 (TthAA22_04550)	ruvB	418447..419421 (-)	975	WP_024119065.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LDO10_RS02345 (TthAA22_04560)	panB	419447..420232 (+)	786	WP_008631646.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
LDO10_RS02350 (TthAA22_04570)	-	420280..421206 (+)	927	WP_143584727.1	RluA family pseudouridine synthase	-
LDO10_RS02355 (TthAA22_04580)	-	421203..422096 (+)	894	WP_143584728.1	site-specific DNA-methyltransferase	-
LDO10_RS02360	-	422302..422565 (-)	264	WP_187287946.1	hypothetical protein	-
LDO10_RS02365 (TthAA22_04600)	lysN	422734..423927 (-)	1194	WP_143584730.1	2-aminoadipate transaminase	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 35959.72 Da
• Isoelectric Point: 6.3227

>NTDB_id=75894 LDO10_RS02340 WP_024119065.1 418447..419421(-) (ruvB) [Thermus thermophilus strain AA2-2]
MDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG
IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=75894 LDO10_RS02340 WP_024119065.1 418447..419421(-) (ruvB) [Thermus thermophilus strain AA2-2]
GTGGACGACCTCGCCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTCTA
CCTCGAGGCGGCCAAGGCCCGAAAGGAGCCCTTGGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTCGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCCGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAAGGTCCGGCGGCGAGGACCATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGACCCGGCCTGATCACCGCGCCCCTCCTGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAGGGGGTGATGCGGGACGCCCGCCTCCTCGGGGTGAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAGGTCATCACCCGGGAGCGGGCCCTGGAGGCCCTTGCCGCCCTGGGCCTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGCGGCCCCGTGGGCCT
CGCCACCTTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAGGAGGTGCACGAGCCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACCCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTACCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (168-241)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae R6	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae D39	56.774	95.679	0.543
ruvB	Synechocystis sp. PCC 6803	51.258	98.148	0.503
ruvB	Helicobacter pylori 26695	50.799	96.605	0.491