Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OR614_RS00300 Genome accession   NZ_CP112896
Coordinates   51153..51605 (-) Length   150 a.a.
NCBI ID   WP_078802173.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46153..56605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OR614_RS00260 (OR614_00260) - 46852..47238 (-) 387 WP_016533425.1 hypothetical protein -
  OR614_RS00265 (OR614_00265) - 47354..47809 (-) 456 WP_014390696.1 hypothetical protein -
  OR614_RS00270 (OR614_00270) - 47854..48207 (-) 354 WP_078801811.1 hypothetical protein -
  OR614_RS00275 (OR614_00275) - 48216..48743 (-) 528 WP_078801812.1 DUF551 domain-containing protein -
  OR614_RS00280 (OR614_00280) rdgC 48887..49789 (-) 903 Protein_51 recombination-associated protein RdgC -
  OR614_RS00285 (OR614_00285) - 49792..50175 (-) 384 WP_078801813.1 hypothetical protein -
  OR614_RS00290 (OR614_00290) - 50254..50565 (-) 312 WP_014390701.1 DUF6378 domain-containing protein -
  OR614_RS00295 (OR614_00295) - 50565..51086 (-) 522 WP_014390702.1 MazG-like family protein -
  OR614_RS00300 (OR614_00300) ssb 51153..51605 (-) 453 WP_078802173.1 single-stranded DNA-binding protein Machinery gene
  OR614_RS00305 (OR614_00305) - 51605..52264 (-) 660 WP_041423209.1 translocation protein TolB precursor -
  OR614_RS00310 (OR614_00310) - 52251..53201 (-) 951 WP_267173098.1 recombinase RecT -
  OR614_RS00315 (OR614_00315) - 53203..53490 (-) 288 WP_014391452.1 hypothetical protein -
  OR614_RS00320 (OR614_00320) - 53503..53739 (-) 237 WP_078801815.1 hypothetical protein -
  OR614_RS00325 (OR614_00325) - 53711..54010 (-) 300 WP_078801816.1 hypothetical protein -
  OR614_RS00330 (OR614_00330) - 54158..54388 (+) 231 WP_223251317.1 hypothetical protein -
  OR614_RS00335 (OR614_00335) - 54451..55092 (-) 642 WP_078801817.1 Bro-N domain-containing protein -
  OR614_RS00340 (OR614_00340) - 55374..55916 (-) 543 WP_078737823.1 DUF4760 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17078.96 Da        Isoelectric Point: 7.9721

>NTDB_id=758794 OR614_RS00300 WP_078802173.1 51153..51605(-) (ssb) [Pasteurella multocida strain PF18]
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=758794 OR614_RS00300 WP_078802173.1 51153..51605(-) (ssb) [Pasteurella multocida strain PF18]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.556

100

0.727
  ssb Vibrio cholerae strain A1552

53.237

92.667

0.493
  ssb Neisseria gonorrhoeae MS11

45.985

91.333

0.42
  ssb Neisseria meningitidis MC58

45.985

91.333

0.42