NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	OR610_RS10935	Genome accession	NZ_CP112893
Coordinates	2255034..2255483 (-)	Length	149 a.a.
NCBI ID	WP_266199913.1	Uniprot ID	-
Organism	Pasteurella multocida strain PF15
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2250034..2260483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OR610_RS10895 (OR610_10895)	-	2250816..2251148 (-)	333	WP_015691045.1	helix-turn-helix domain-containing protein	-
OR610_RS10900 (OR610_10900)	-	2251276..2251731 (-)	456	WP_267174532.1	pyruvate kinase	-
OR610_RS10905 (OR610_10905)	-	2251777..2252082 (-)	306	WP_108575008.1	hypothetical protein	-
OR610_RS10910 (OR610_10910)	-	2252094..2252624 (-)	531	WP_225529740.1	DUF551 domain-containing protein	-
OR610_RS10915 (OR610_10915)	rdgC	2252768..2253670 (-)	903	WP_267174533.1	recombination-associated protein RdgC	-
OR610_RS10920 (OR610_10920)	-	2253673..2254056 (-)	384	WP_267174534.1	hypothetical protein	-
OR610_RS10925 (OR610_10925)	-	2254135..2254446 (-)	312	WP_014390701.1	DUF6378 domain-containing protein	-
OR610_RS10930 (OR610_10930)	-	2254446..2254967 (-)	522	WP_014390702.1	MazG-like family protein	-
OR610_RS10935 (OR610_10935)	ssb	2255034..2255483 (-)	450	WP_266199913.1	single-stranded DNA-binding protein	Machinery gene
OR610_RS10940 (OR610_10940)	-	2255483..2256142 (-)	660	WP_041423209.1	translocation protein TolB precursor	-
OR610_RS10945 (OR610_10945)	-	2256129..2257084 (-)	956	Protein_2117	recombinase RecT	-
OR610_RS10950 (OR610_10950)	-	2257086..2257373 (-)	288	WP_014391452.1	hypothetical protein	-
OR610_RS10955 (OR610_10955)	-	2257386..2257622 (-)	237	WP_075271355.1	hypothetical protein	-
OR610_RS10960 (OR610_10960)	-	2257594..2257893 (-)	300	WP_078802174.1	hypothetical protein	-
OR610_RS10965 (OR610_10965)	-	2258041..2258271 (+)	231	WP_223251317.1	hypothetical protein	-
OR610_RS10970 (OR610_10970)	-	2258333..2259142 (-)	810	WP_323373198.1	KilA-N domain-containing protein	-
OR610_RS10975 (OR610_10975)	-	2259281..2259658 (-)	378	Protein_2123	Bro-N domain-containing protein	-
OR610_RS10980 (OR610_10980)	-	2259999..2260124 (+)	126	WP_014391103.1	hypothetical protein	-

Sequence

Protein

Download Length: 149 a.a. Molecular weight: 17024.90 Da Isoelectric Point: 6.9835

                                >NTDB_id=758744 OR610_RS10935 WP_266199913.1 2255034..2255483(-) (ssb) [Pasteurella multocida strain PF15]

MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG

KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKSGKPVQKFDNFEEDDIPF

Nucleotide

Download Length: 450 bp

                                >NTDB_id=758744 OR610_RS10935 WP_266199913.1 2255034..2255483(-) (ssb) [Pasteurella multocida strain PF15]

ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC

TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACACAAACTGAATGGC

ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT

AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT

GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAAGTGGAA

AACCAGTGCAGAAGTTTGATAATTTTGAAGAAGACGATATACCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Glaesserella parasuis strain SC1401	61.878	100	0.752
ssb	Vibrio cholerae strain A1552	52.518	93.289	0.49
ssb	Neisseria meningitidis MC58	39.548	100	0.47
ssb	Neisseria gonorrhoeae MS11	43.796	91.946	0.403

Detailed information NTG0758744