Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OA858_RS10525 Genome accession   NZ_CP112874
Coordinates   2316482..2316850 (-) Length   122 a.a.
NCBI ID   WP_281009238.1    Uniprot ID   -
Organism   Pseudanabaena galeata CCNP1313     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2311482..2321850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA858_RS10505 (OA858_10500) - 2311740..2312252 (+) 513 WP_281009234.1 Dps family protein -
  OA858_RS10510 (OA858_10505) - 2312569..2313705 (+) 1137 WP_281009235.1 glycosyltransferase family 2 protein -
  OA858_RS10515 (OA858_10510) - 2313850..2314671 (-) 822 WP_281009236.1 hypothetical protein -
  OA858_RS10520 (OA858_10515) - 2314920..2316257 (-) 1338 WP_281009237.1 glutamate-5-semialdehyde dehydrogenase -
  OA858_RS10525 (OA858_10520) pilH 2316482..2316850 (-) 369 WP_281009238.1 response regulator transcription factor Machinery gene
  OA858_RS10530 (OA858_10525) - 2317279..2317920 (+) 642 WP_281009239.1 response regulator transcription factor -
  OA858_RS10535 (OA858_10530) rnhA 2318301..2319215 (+) 915 WP_281009240.1 ribonuclease HI -
  OA858_RS10540 (OA858_10535) - 2319595..2319984 (-) 390 WP_281009241.1 transposase family protein -
  OA858_RS10545 (OA858_10540) plsY 2320189..2320845 (-) 657 WP_281009242.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  OA858_RS10550 (OA858_10545) - 2321063..2321269 (-) 207 WP_199310483.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13846.03 Da        Isoelectric Point: 6.4542

>NTDB_id=758631 OA858_RS10525 WP_281009238.1 2316482..2316850(-) (pilH) [Pseudanabaena galeata CCNP1313]
MSKILVVEDSKTQREMIANLLQNNQFEVVTAKNGVEAIAQAEVLHPDLAILDIVMPEMNGYELCRKLRDNPETWNISIVI
CSSKCTKADRHWGYRQGANAYIGKPFLPDELMNTVRTLLRIS

Nucleotide


Download         Length: 369 bp        

>NTDB_id=758631 OA858_RS10525 WP_281009238.1 2316482..2316850(-) (pilH) [Pseudanabaena galeata CCNP1313]
ATGTCCAAAATTCTTGTTGTTGAAGATAGTAAGACTCAGAGGGAAATGATAGCTAATTTACTTCAAAACAATCAGTTTGA
AGTTGTGACTGCTAAGAATGGGGTGGAAGCGATCGCCCAAGCTGAGGTGTTACATCCTGATCTCGCGATTTTAGATATTG
TAATGCCTGAAATGAATGGCTATGAGCTTTGTCGGAAACTGAGAGACAATCCTGAAACTTGGAATATCAGCATCGTTATA
TGTTCGTCTAAATGTACCAAAGCTGATCGCCATTGGGGATATCGACAAGGGGCAAATGCTTATATTGGCAAGCCTTTTCT
CCCAGATGAATTGATGAATACAGTAAGGACTTTATTGAGAATATCGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

51.667

98.361

0.508
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393
  covR Streptococcus salivarius strain HSISS4

37.19

99.18

0.369
  chpA Acinetobacter baumannii strain A118

37.931

95.082

0.361