Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OA858_RS08400 Genome accession   NZ_CP112874
Coordinates   1856487..1856855 (-) Length   122 a.a.
NCBI ID   WP_094532768.1    Uniprot ID   -
Organism   Pseudanabaena galeata CCNP1313     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851487..1861855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA858_RS08390 (OA858_08385) - 1853368..1855719 (-) 2352 WP_281008849.1 methyl-accepting chemotaxis protein -
  OA858_RS08395 (OA858_08390) - 1855785..1856312 (-) 528 WP_281008850.1 chemotaxis protein CheW -
  OA858_RS08400 (OA858_08395) pilH 1856487..1856855 (-) 369 WP_094532768.1 response regulator transcription factor Machinery gene
  OA858_RS08405 (OA858_08400) - 1857440..1857952 (-) 513 Protein_1668 ATP-binding protein -
  OA858_RS08410 (OA858_08405) - 1857961..1858284 (+) 324 WP_281008851.1 HNH endonuclease -
  OA858_RS08415 (OA858_08410) - 1858336..1859166 (+) 831 WP_281008852.1 ATP-binding protein -
  OA858_RS08420 (OA858_08415) - 1859163..1859387 (+) 225 WP_281008853.1 hypothetical protein -
  OA858_RS08425 (OA858_08420) - 1859375..1860511 (+) 1137 WP_281008854.1 metal-dependent hydrolase -
  OA858_RS08430 (OA858_08425) - 1860396..1861523 (+) 1128 WP_281008855.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13625.84 Da        Isoelectric Point: 4.9330

>NTDB_id=758630 OA858_RS08400 WP_094532768.1 1856487..1856855(-) (pilH) [Pseudanabaena galeata CCNP1313]
MSTVLVVEDSVTQREMIEDLLKGSGLTVKTAGDGVEALEQMQGNCPDIVVMDIVMPRMNGYELCRRIKTDPKTERVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPQELVGTVKQLLRKA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=758630 OA858_RS08400 WP_094532768.1 1856487..1856855(-) (pilH) [Pseudanabaena galeata CCNP1313]
ATGAGTACAGTTCTGGTGGTTGAAGATAGCGTGACACAAAGAGAAATGATTGAGGACTTACTCAAGGGTAGCGGTCTAAC
CGTTAAGACAGCAGGTGATGGTGTGGAAGCACTAGAACAAATGCAAGGCAATTGCCCAGACATCGTAGTTATGGATATTG
TCATGCCCCGCATGAATGGTTACGAGCTATGTCGTCGTATTAAAACTGATCCCAAAACTGAGCGCGTTCCCGTCGTAATG
TGTTCATCTAAAGGTGAAGAATTTGATCGCTACTGGGGAATGAAGCAAGGTGCTGATGCTTATATAGCAAAGCCATTTCA
GCCTCAAGAACTAGTAGGCACTGTAAAGCAGTTACTTAGAAAAGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

73.554

99.18

0.73
  pilG Acinetobacter baumannii strain A118

42.982

93.443

0.402
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393
  pilL-C Synechocystis sp. PCC 6803

39.167

98.361

0.385