Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSC49_RS23580 Genome accession   NZ_CP112868
Coordinates   5123062..5123577 (-) Length   171 a.a.
NCBI ID   WP_266246989.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5118062..5128577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC49_RS23555 (OSC49_23555) - 5118486..5119241 (-) 756 WP_181081314.1 alpha/beta fold hydrolase -
  OSC49_RS23560 (OSC49_23560) - 5119231..5120340 (-) 1110 WP_266246984.1 DUF3182 family protein -
  OSC49_RS23565 (OSC49_23565) - 5120513..5121484 (-) 972 WP_266246985.1 GlxA family transcriptional regulator -
  OSC49_RS23570 (OSC49_23570) - 5121581..5122144 (+) 564 WP_266246986.1 cysteine hydrolase family protein -
  OSC49_RS23575 (OSC49_23575) tam 5122165..5122926 (-) 762 WP_266246988.1 trans-aconitate 2-methyltransferase -
  OSC49_RS23580 (OSC49_23580) ssb 5123062..5123577 (-) 516 WP_266246989.1 single-stranded DNA-binding protein Machinery gene
  OSC49_RS23585 (OSC49_23585) - 5123587..5124981 (-) 1395 WP_181081309.1 MFS transporter -
  OSC49_RS23590 (OSC49_23590) uvrA 5125160..5127994 (+) 2835 WP_266246991.1 excinuclease ABC subunit UvrA -
  OSC49_RS23595 (OSC49_23595) bfr 5128062..5128526 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19019.17 Da        Isoelectric Point: 5.9455

>NTDB_id=758511 OSC49_RS23580 WP_266246989.1 5123062..5123577(-) (ssb) [Pseudomonas quebecensis isolate S1Bt3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQSGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=758511 OSC49_RS23580 WP_266246989.1 5123062..5123577(-) (ssb) [Pseudomonas quebecensis isolate S1Bt3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTATCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAATTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAGATCGTGGTCGACATGCAGGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAGCAGGGCCAGAGCGGCATGTCCAATTCGGCACCGCGTCCCCAGC
AGTCGCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCGCAGCCGGCGGCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.591
  ssb Neisseria meningitidis MC58

48.023

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.271

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.485