Detailed information NTG0075837

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LDO09_RS02255
• Genome accession: NZ_AP024926
• Coordinates: 408963..409937 (-)
• Length: 324 a.a.
• NCBI ID: WP_024119065.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA1-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 403963..414937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO09_RS02235 (TthAA11_04330)	-	404219..404647 (+)	429	WP_011227910.1	hypothetical protein	-
LDO09_RS02240 (TthAA11_04340)	ftsH	404633..406489 (-)	1857	WP_143584724.1	ATP-dependent zinc metalloprotease FtsH	-
LDO09_RS02245 (TthAA11_04350)	-	406562..407914 (+)	1353	WP_014630116.1	tetratricopeptide repeat protein	-
LDO09_RS02250 (TthAA11_04360)	-	407935..408966 (-)	1032	WP_143584725.1	DUF4388 domain-containing protein	-
LDO09_RS02255 (TthAA11_04370)	ruvB	408963..409937 (-)	975	WP_024119065.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LDO09_RS02260 (TthAA11_04380)	panB	409963..410748 (+)	786	WP_008631646.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
LDO09_RS02265 (TthAA11_04390)	-	410795..411721 (+)	927	WP_143584727.1	RluA family pseudouridine synthase	-
LDO09_RS02270 (TthAA11_04400)	-	411718..412611 (+)	894	WP_143584728.1	site-specific DNA-methyltransferase	-
LDO09_RS02275 (TthAA11_04410)	-	412586..413263 (+)	678	WP_172619159.1	hypothetical protein	-
LDO09_RS02280 (TthAA11_04420)	lysN	413249..414442 (-)	1194	WP_143584730.1	2-aminoadipate transaminase	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 35959.72 Da
• Isoelectric Point: 6.3227

>NTDB_id=75837 LDO09_RS02255 WP_024119065.1 408963..409937(-) (ruvB) [Thermus thermophilus strain AA1-1]
MDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG
IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=75837 LDO09_RS02255 WP_024119065.1 408963..409937(-) (ruvB) [Thermus thermophilus strain AA1-1]
GTGGACGACCTCGCCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTCTA
CCTCGAGGCGGCCAAGGCCCGAAAGGAGCCCTTGGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTCGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCCGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAAGGTCCGGCGGCGAGGACCATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGACCCGGCCTGATCACCGCGCCCCTCCTGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAGGGGGTGATGCGGGACGCCCGCCTCCTCGGGGTGAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAGGTCATCACCCGGGAGCGGGCCCTGGAGGCCCTTGCCGCCCTGGGCCTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGCGGCCCCGTGGGCCT
CGCCACCTTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAGGAGGTGCACGAGCCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACCCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTACCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (168-241)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae R6	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae D39	56.774	95.679	0.543
ruvB	Synechocystis sp. PCC 6803	51.258	98.148	0.503
ruvB	Helicobacter pylori 26695	50.799	96.605	0.491