Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORU08_RS07350 Genome accession   NZ_CP111142
Coordinates   1547445..1547945 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1547445..1561310 1547445..1547945 within 0


Gene organization within MGE regions


Location: 1547445..1561310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORU08_RS07350 (ORU08_07350) ssb 1547445..1547945 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  ORU08_RS07355 (ORU08_07355) rdgC 1548083..1548985 (+) 903 WP_225529741.1 recombination-associated protein RdgC -
  ORU08_RS07360 (ORU08_07360) - 1549129..1549659 (+) 531 WP_225529740.1 DUF551 domain-containing protein -
  ORU08_RS07365 (ORU08_07365) - 1549671..1549976 (+) 306 WP_108575008.1 hypothetical protein -
  ORU08_RS07370 (ORU08_07370) - 1550022..1550465 (+) 444 WP_225529739.1 pyruvate kinase -
  ORU08_RS07375 (ORU08_07375) - 1550593..1550925 (+) 333 WP_015691045.1 helix-turn-helix domain-containing protein -
  ORU08_RS07380 (ORU08_07380) - 1550835..1551887 (+) 1053 WP_250010829.1 tyrosine-type recombinase/integrase -
  ORU08_RS07425 (ORU08_07425) gmhB 1557973..1558527 (-) 555 WP_010907307.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  ORU08_RS07430 (ORU08_07430) metN 1558720..1559754 (+) 1035 WP_005718783.1 methionine ABC transporter ATP-binding protein MetN -
  ORU08_RS07435 (ORU08_07435) - 1559747..1560436 (+) 690 WP_005718785.1 methionine ABC transporter permease -
  ORU08_RS07440 (ORU08_07440) - 1560480..1561310 (+) 831 WP_005718787.1 MetQ/NlpA family lipoprotein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=758086 ORU08_RS07350 WP_010907419.1 1547445..1547945(+) (ssb) [Pasteurella multocida strain PF5]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=758086 ORU08_RS07350 WP_010907419.1 1547445..1547945(+) (ssb) [Pasteurella multocida strain PF5]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47