Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OPS05_RS25010 Genome accession   NZ_CP111114
Coordinates   5533443..5533961 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A031FLF5
Organism   Pseudomonas koreensis strain FP1691     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5528443..5538961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPS05_RS24980 (OPS05_24980) - 5528808..5529476 (+) 669 WP_096796345.1 YjfI family protein -
  OPS05_RS24985 (OPS05_24985) - 5529494..5530192 (+) 699 WP_115988786.1 PspA/IM30 family protein -
  OPS05_RS24990 (OPS05_24990) - 5530388..5531035 (+) 648 WP_134787450.1 DUF2491 family protein -
  OPS05_RS24995 (OPS05_24995) - 5531051..5531476 (+) 426 WP_027614247.1 DUF350 domain-containing protein -
  OPS05_RS25000 (OPS05_25000) - 5531494..5532168 (+) 675 WP_134787451.1 DUF1190 domain-containing protein -
  OPS05_RS25005 (OPS05_25005) - 5532171..5533328 (+) 1158 WP_134787452.1 glutathionylspermidine synthase family protein -
  OPS05_RS25010 (OPS05_25010) ssb 5533443..5533961 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  OPS05_RS25015 (OPS05_25015) - 5533971..5535368 (-) 1398 WP_027614250.1 MFS transporter -
  OPS05_RS25020 (OPS05_25020) uvrA 5535560..5538394 (+) 2835 WP_027614251.1 excinuclease ABC subunit UvrA -
  OPS05_RS25025 (OPS05_25025) bfr 5538459..5538923 (-) 465 WP_003228714.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=757959 OPS05_RS25010 WP_007966163.1 5533443..5533961(-) (ssb) [Pseudomonas koreensis strain FP1691]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=757959 OPS05_RS25010 WP_007966163.1 5533443..5533961(-) (ssb) [Pseudomonas koreensis strain FP1691]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAAAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCTCCACAACAGCGTCCAGCCCCGGCTCCACAGCAGGCTGCACCGCAACCGGCC
CCGGATTTCGACAGCTTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5