Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ORI84_RS12015 Genome accession   NZ_CP111083
Coordinates   2436515..2437849 (+) Length   444 a.a.
NCBI ID   WP_010907082.1    Uniprot ID   Q9CLK3
Organism   Pasteurella multocida strain PF4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2431515..2442849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI84_RS11990 (ORI84_11960) - 2431591..2434152 (-) 2562 WP_010907084.1 penicillin-binding protein 1A -
  ORI84_RS11995 (ORI84_11965) - 2434288..2435061 (+) 774 WP_010907083.1 pilus assembly protein PilM -
  ORI84_RS12000 (ORI84_11970) - 2435101..2435616 (+) 516 WP_005751904.1 hypothetical protein -
  ORI84_RS12005 (ORI84_11975) - 2435616..2436140 (+) 525 WP_005754754.1 hypothetical protein -
  ORI84_RS12010 (ORI84_11980) - 2436143..2436505 (+) 363 WP_005748555.1 pilus assembly protein PilP -
  ORI84_RS12015 (ORI84_11985) comE 2436515..2437849 (+) 1335 WP_010907082.1 type IV pilus secretin PilQ Machinery gene
  ORI84_RS12020 (ORI84_11990) aroK 2438032..2438559 (+) 528 WP_005717623.1 shikimate kinase AroK -
  ORI84_RS12025 (ORI84_11995) aroB 2438576..2439664 (+) 1089 WP_010907081.1 3-dehydroquinate synthase -
  ORI84_RS12030 (ORI84_12000) - 2439668..2440573 (+) 906 WP_005723696.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  ORI84_RS12035 (ORI84_12005) - 2440620..2440925 (-) 306 WP_005723691.1 DUF721 domain-containing protein -
  ORI84_RS12040 (ORI84_12010) secM 2441018..2441329 (+) 312 WP_005723689.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49206.63 Da        Isoelectric Point: 8.0315

>NTDB_id=757794 ORI84_RS12015 WP_010907082.1 2436515..2437849(+) (comE) [Pasteurella multocida strain PF4]
MWRAFRKISLVYFLCGVAYVGSSQAQDAEHFYLRLKQAPLVEMLQYLALQQHQDLLIDDHLEGTLSLQMKKTTFEKCLQS
IARMKQLELHQEGKSYYLTSPSGVAANDTHHPTSLMTSSIKLHFAKAAEVVKSLTSGQGSLLSVGGSLSFDERTNLLLIQ
DEPQSIQRIKALVAEMDKPIEQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS
APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMKRGKDKSESVEFREAVLGLDV
TPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEINTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKH
VFSQKTERHQKRELVIFVTPHIIKPSQGSPEQKTTRVKKSAKSR

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=757794 ORI84_RS12015 WP_010907082.1 2436515..2437849(+) (comE) [Pasteurella multocida strain PF4]
ATGTGGCGAGCATTCAGAAAAATATCTCTTGTGTACTTTTTATGTGGGGTTGCTTATGTTGGAAGTAGTCAAGCACAAGA
CGCAGAACATTTTTATTTACGTTTAAAACAAGCGCCTTTAGTCGAAATGTTACAGTATTTAGCATTGCAACAACATCAGG
ATTTGTTAATCGATGATCATTTAGAGGGCACATTATCACTACAGATGAAAAAGACAACCTTTGAGAAATGTTTACAGTCG
ATTGCAAGAATGAAACAACTTGAGTTACATCAAGAAGGAAAATCCTATTATTTAACTTCCCCTTCAGGTGTTGCAGCAAA
CGATACTCATCATCCTACGTCATTGATGACATCTTCAATAAAATTGCATTTTGCCAAAGCCGCAGAGGTGGTGAAATCTT
TAACTTCAGGGCAGGGAAGTTTACTTTCTGTCGGGGGGAGTTTGAGTTTTGATGAGCGGACTAATTTACTGCTGATTCAG
GATGAACCGCAATCAATACAGCGTATTAAAGCATTAGTAGCAGAAATGGATAAACCCATTGAACAAATTGCGATCGAAGC
TAGGATTGTGACGATGACAGACGAAAGTTTGCAGGAACTTGGTGTAAGATGGGGGCTATTTCAAGCAACAGAACAGGCAC
ATACTATTGCAGGGAGTTTAGCCGCGAACGGCTTTTCGAATATAGAAAACCAATTAAATGTGAATTTCTCGACCAATAGT
GCACCTGTTGGTTCCATCGCCTTACAGTTGGCGAAAATAAATGGTCGATTATTAGACTTGGAATTAACTGCCTTGGAGCG
AGAAAAGCATATTGAGATTATTGCGAGTCCTCGTTTATTAACAACGAATAAAAAAAGTGCCAGTATCAAACAAGGGACGG
AAATTCCTTATGTGATGAAACGGGGAAAAGATAAAAGCGAATCGGTGGAATTTCGAGAAGCTGTATTAGGTTTAGATGTG
ACACCGCATATCTCAAAAGACAACACGATTTTATTAGATTTATTGATTACACAAAATACATTAGGTGCACCGGTAGTGTA
TGATAAAGGTGAAATTGTTTCGATCGATAAACAGGAAATCAATACTCAAGTCGTCGCTCAAGATGGTGAAACCATCGTTT
TAGGTGGGGTGTTTCATGATACGATGACAAAGGGAGTCAATAAAGTACCACTACTAGGGGATTTGCCTTTGCTTAAACAT
GTGTTTAGCCAGAAAACTGAACGTCATCAAAAGCGGGAATTAGTGATTTTTGTCACTCCTCATATTATCAAACCTAGCCA
AGGTTCGCCTGAACAAAAAACAACAAGAGTTAAAAAATCTGCAAAATCGAGGTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(264-424)

Bacterial type II/III secretion system short domain (Secretin_N)

(119-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CLK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

62.212

97.748

0.608
  comE Haemophilus influenzae 86-028NP

61.521

97.748

0.601
  comE Glaesserella parasuis strain SC1401

50.976

92.342

0.471
  pilQ Vibrio campbellii strain DS40M4

39.524

94.595

0.374
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.806

92.793

0.369
  pilQ Vibrio cholerae strain A1552

39.806

92.793

0.369