Detailed information NTG0757760

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ORI82_RS07345
• Genome accession: NZ_CP111082
• Coordinates: 1547208..1547708 (+)
• Length: 166 a.a.
• NCBI ID: WP_010907419.1
• Uniprot ID: -
• Organism: Pasteurella multocida strain PF3
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1540348..1561073	1547208..1547708	within	0

Gene organization within MGE regions

Location: 1540348..1561073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ORI82_RS07325 (ORI82_07315)	rnr	1540348..1542750 (+)	2403	WP_010907422.1	ribonuclease R	-
ORI82_RS07330 (ORI82_07320)	rlmB	1542751..1543488 (+)	738	WP_005725044.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ORI82_RS07335 (ORI82_07325)	sodC	1543574..1544134 (-)	561	WP_010907421.1	superoxide dismutase family protein	-
ORI82_RS07340 (ORI82_07330)	uvrA	1544205..1547036 (-)	2832	WP_010907420.1	excinuclease ABC subunit UvrA	-
ORI82_RS07345 (ORI82_07335)	ssb	1547208..1547708 (+)	501	WP_010907419.1	single-stranded DNA-binding protein	Machinery gene
ORI82_RS07350 (ORI82_07340)	rdgC	1547846..1548748 (+)	903	WP_225529741.1	recombination-associated protein RdgC	-
ORI82_RS07355 (ORI82_07345)	-	1548892..1549422 (+)	531	WP_225529740.1	DUF551 domain-containing protein	-
ORI82_RS07360 (ORI82_07350)	-	1549434..1549739 (+)	306	WP_108575008.1	hypothetical protein	-
ORI82_RS07365 (ORI82_07355)	-	1549785..1550228 (+)	444	WP_225529739.1	pyruvate kinase	-
ORI82_RS07370 (ORI82_07360)	-	1550356..1550688 (+)	333	WP_015691045.1	helix-turn-helix domain-containing protein	-
ORI82_RS07375 (ORI82_07365)	-	1550598..1551650 (+)	1053	WP_250010829.1	site-specific integrase	-
ORI82_RS07420 (ORI82_07410)	gmhB	1557736..1558290 (-)	555	WP_010907307.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
ORI82_RS07425 (ORI82_07415)	metN	1558483..1559517 (+)	1035	WP_005718783.1	methionine ABC transporter ATP-binding protein MetN	-
ORI82_RS07430 (ORI82_07420)	-	1559510..1560199 (+)	690	WP_005718785.1	methionine ABC transporter permease	-
ORI82_RS07435 (ORI82_07425)	-	1560243..1561073 (+)	831	WP_005718787.1	MetQ/NlpA family lipoprotein	-

Sequence

Protein

• Length: 166 a.a.
• Molecular weight: 18687.70 Da
• Isoelectric Point: 5.3353

>NTDB_id=757760 ORI82_RS07345 WP_010907419.1 1547208..1547708(+) (ssb) [Pasteurella multocida strain PF3]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide

• Length: 501 bp

>NTDB_id=757760 ORI82_RS07345 WP_010907419.1 1547208..1547708(+) (ssb) [Pasteurella multocida strain PF3]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	68.681	100	0.753
ssb	Vibrio cholerae strain A1552	54.144	100	0.59
ssb	Neisseria meningitidis MC58	44.068	100	0.47
ssb	Neisseria gonorrhoeae MS11	44.068	100	0.47