Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORI57_RS06010 Genome accession   NZ_CP111081
Coordinates   1302504..1303004 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1295644..1320137 1302504..1303004 within 0


Gene organization within MGE regions


Location: 1295644..1320137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI57_RS05990 (ORI57_05975) rnr 1295644..1298046 (+) 2403 WP_010907422.1 ribonuclease R -
  ORI57_RS05995 (ORI57_05980) rlmB 1298047..1298784 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ORI57_RS06000 (ORI57_05985) sodC 1298870..1299430 (-) 561 WP_010907421.1 superoxide dismutase family protein -
  ORI57_RS06005 (ORI57_05990) uvrA 1299501..1302332 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  ORI57_RS06010 (ORI57_05995) ssb 1302504..1303004 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  ORI57_RS06015 (ORI57_06000) rdgC 1303142..1304044 (+) 903 WP_225529741.1 recombination-associated protein RdgC -
  ORI57_RS06020 (ORI57_06005) - 1304188..1304718 (+) 531 WP_225529740.1 DUF551 domain-containing protein -
  ORI57_RS06025 (ORI57_06010) - 1304730..1305035 (+) 306 WP_108575008.1 hypothetical protein -
  ORI57_RS06030 (ORI57_06015) - 1305081..1305524 (+) 444 WP_225529739.1 pyruvate kinase -
  ORI57_RS06035 (ORI57_06020) - 1305652..1305984 (+) 333 WP_015691045.1 helix-turn-helix domain-containing protein -
  ORI57_RS06040 (ORI57_06025) - 1305894..1306946 (+) 1053 WP_250010829.1 site-specific integrase -
  ORI57_RS06085 (ORI57_06070) gmhB 1313032..1313586 (-) 555 WP_010907307.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  ORI57_RS06090 (ORI57_06075) metN 1313779..1314813 (+) 1035 WP_005718783.1 methionine ABC transporter ATP-binding protein MetN -
  ORI57_RS06095 (ORI57_06080) - 1314806..1315495 (+) 690 WP_005718785.1 methionine ABC transporter permease -
  ORI57_RS06100 (ORI57_06085) - 1315539..1316369 (+) 831 WP_005718787.1 MetQ/NlpA family lipoprotein -
  ORI57_RS06105 (ORI57_06090) - 1316675..1316842 (+) 168 WP_005752243.1 alkaline phosphatase PhoX -
  ORI57_RS06110 (ORI57_06095) glmS 1317087..1318919 (-) 1833 WP_078801871.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  ORI57_RS06115 (ORI57_06100) - 1319123..1319395 (-) 273 WP_005724684.1 HU family DNA-binding protein -
  ORI57_RS06120 (ORI57_06105) - 1319547..1320137 (-) 591 WP_005718796.1 YjaG family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=757734 ORI57_RS06010 WP_010907419.1 1302504..1303004(+) (ssb) [Pasteurella multocida strain PF2]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=757734 ORI57_RS06010 WP_010907419.1 1302504..1303004(+) (ssb) [Pasteurella multocida strain PF2]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47