Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH144_RS15505 Genome accession   NZ_CP111079
Coordinates   3730181..3730657 (+) Length   158 a.a.
NCBI ID   WP_266203181.1    Uniprot ID   -
Organism   Pontibacter kalidii strain XAAS-72     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3725181..3735657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH144_RS15485 - 3725600..3727198 (-) 1599 WP_266203178.1 Rne/Rng family ribonuclease -
  OH144_RS15490 - 3727417..3728286 (-) 870 WP_266203179.1 lipopolysaccharide assembly protein LapB -
  OH144_RS15495 - 3728346..3728651 (-) 306 WP_046309325.1 HU family DNA-binding protein -
  OH144_RS15500 mutY 3728975..3730066 (+) 1092 WP_266203180.1 A/G-specific adenine glycosylase -
  OH144_RS15505 ssb 3730181..3730657 (+) 477 WP_266203181.1 single-stranded DNA-binding protein Machinery gene
  OH144_RS15510 gldE 3730684..3732054 (+) 1371 WP_266203182.1 gliding motility-associated protein GldE -
  OH144_RS15515 gldD 3732068..3732637 (+) 570 WP_266206350.1 gliding motility lipoprotein GldD -
  OH144_RS15520 - 3733303..3733512 (-) 210 WP_266203183.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 16902.54 Da        Isoelectric Point: 5.2816

>NTDB_id=757720 OH144_RS15505 WP_266203181.1 3730181..3730657(+) (ssb) [Pontibacter kalidii strain XAAS-72]
MASVNKVILIGNLGKDPEVRHLEGGVAVARFPIATSESFKDKSGQKQERTEWHNIVVWRGLAEVAEKYLRKGNSVYIEGR
IRTNSYQDKEGVQRYSTEIVADNMTMLGGRSDNGGSGGGNYQESSAASGGNYAGGATADKGSSPAGGFQNDEPDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=757720 OH144_RS15505 WP_266203181.1 3730181..3730657(+) (ssb) [Pontibacter kalidii strain XAAS-72]
ATGGCAAGTGTAAACAAAGTAATCCTGATCGGAAACCTGGGCAAAGACCCGGAAGTACGTCACCTGGAAGGTGGTGTGGC
TGTTGCCCGCTTCCCAATCGCTACGTCCGAATCCTTCAAGGATAAGAGCGGACAGAAGCAGGAGCGCACCGAGTGGCATA
ACATCGTAGTATGGAGAGGCCTCGCCGAAGTGGCGGAGAAATACCTGCGCAAAGGCAATTCAGTGTACATTGAAGGACGT
ATCCGCACGAACAGCTACCAGGACAAAGAAGGCGTGCAGCGCTACAGCACCGAGATCGTGGCCGATAACATGACCATGCT
CGGAGGCCGCAGCGACAATGGCGGCAGCGGCGGTGGCAACTACCAGGAATCCTCTGCGGCAAGCGGCGGCAACTATGCCG
GCGGCGCAACGGCCGATAAGGGCAGCAGCCCGGCTGGCGGGTTCCAGAACGACGAGCCAGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.532
  ssb Neisseria meningitidis MC58

45.143

100

0.5
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.481
  ssb Neisseria gonorrhoeae MS11

51.408

89.873

0.462