Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OP701_RS21470 Genome accession   NZ_CP111073
Coordinates   4225037..4225555 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus inaquosorum strain BSXE-2102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4220037..4230555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP701_RS21445 (OP701_21445) - 4221077..4222432 (+) 1356 WP_060399968.1 MFS transporter -
  OP701_RS21450 (OP701_21450) - 4222505..4222885 (-) 381 WP_060399969.1 VOC family protein -
  OP701_RS21455 (OP701_21455) - 4222941..4223876 (-) 936 WP_060399970.1 LacI family DNA-binding transcriptional regulator -
  OP701_RS21460 (OP701_21460) xth 4223935..4224693 (-) 759 WP_060399971.1 exodeoxyribonuclease III -
  OP701_RS21465 (OP701_21465) rpsR 4224754..4224993 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  OP701_RS21470 (OP701_21470) ssbA 4225037..4225555 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  OP701_RS21475 (OP701_21475) rpsF 4225596..4225883 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  OP701_RS21480 (OP701_21480) ychF 4225994..4227094 (-) 1101 WP_003236624.1 redox-regulated ATPase YchF -
  OP701_RS21485 (OP701_21485) - 4227221..4229224 (-) 2004 WP_060399972.1 molybdopterin-dependent oxidoreductase -
  OP701_RS21490 (OP701_21490) - 4229275..4229481 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=757699 OP701_RS21470 WP_003219228.1 4225037..4225555(-) (ssbA) [Bacillus inaquosorum strain BSXE-2102]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=757699 OP701_RS21470 WP_003219228.1 4225037..4225555(-) (ssbA) [Bacillus inaquosorum strain BSXE-2102]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACCGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGAGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378