Detailed information NTG0075747

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PHLH3_RS05575
• Genome accession: NZ_AP021905
• Coordinates: 1169523..1170392 (-)
• Length: 289 a.a.
• NCBI ID: WP_213628506.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Pc102
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1164523..1175392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHLH3_RS05535 (PHLH8_10980)	-	1165818..1165991 (-)	174	WP_173173318.1	DUF3094 domain-containing protein	-
PHLH3_RS05540 (PHLH8_10990)	-	1166078..1166704 (-)	627	WP_173173316.1	DUF1780 domain-containing protein	-
PHLH3_RS05545 (PHLH8_11000)	-	1166816..1167241 (+)	426	WP_213628502.1	GNAT family N-acetyltransferase	-
PHLH3_RS05550 (PHLH8_11010)	-	1167238..1167705 (+)	468	WP_111263619.1	FAD/FMN-containing dehydrogenase	-
PHLH3_RS05555 (PHLH8_11020)	-	1167702..1168388 (+)	687	WP_213628503.1	energy-coupling factor ABC transporter permease	-
PHLH3_RS05560 (PHLH8_11030)	-	1168496..1168711 (+)	216	WP_213628504.1	hypothetical protein	-
PHLH3_RS05565 (PHLH8_11040)	yacG	1168715..1168915 (-)	201	WP_111263622.1	DNA gyrase inhibitor YacG	-
PHLH3_RS05570 (PHLH8_11050)	coaE	1168912..1169523 (-)	612	WP_213628505.1	dephospho-CoA kinase	-
PHLH3_RS05575 (PHLH8_11060)	pilD	1169523..1170392 (-)	870	WP_213628506.1	A24 family peptidase	Machinery gene
PHLH3_RS05580 (PHLH8_11070)	pilC	1170396..1171613 (-)	1218	WP_213628507.1	type II secretion system F family protein	Machinery gene
PHLH3_RS05585 (PHLH8_11080)	pilB	1171617..1173320 (-)	1704	WP_213628508.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PHLH3_RS05590	-	1173547..1173972 (+)	426	WP_213628509.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31819.80 Da
• Isoelectric Point: 6.6207

>NTDB_id=75747 PHLH3_RS05575 WP_213628506.1 1169523..1170392(-) (pilD) [Pseudomonas sp. Pc102]
MSLVEFMAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPQGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AILGIIILKLRDADSSTPIPFGPYLAIAGWIALLWGVQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=75747 PHLH3_RS05575 WP_213628506.1 1169523..1170392(-) (pilD) [Pseudomonas sp. Pc102]
ATGTCCCTCGTTGAATTTATGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCATCTTCCTCCTCGGCCTTCTCGTCGGCAG
TTTCCTCAACGTCGTGATCTACCGCCTGCCGGTGATGATGTTCCGTGACTGGAAGGCGCAGGCACGGGAGGCGTTGGAGC
TTCCGGCGGAGCCCCAGGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGCTGGCTGGCCCTGGGTGGCAAGTGCTCCTCGTGCAAGGCGCCGATCAAGAAACG
CTACCCGCTAGTAGAGCTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CTTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTATGGCTCGGGCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCCAGCGATGCGCTCTGGGGCGCGGT
GGGCGGCTATCTCAGCCTGTGGTCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCTTGGTGGGC
GCCATATTGGGGATCATCATCCTCAAGCTGCGCGACGCGGACAGCAGCACACCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGTTCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.639	92.042	0.512
pilD	Acinetobacter baumannii D1279779	51.579	98.616	0.509
pilD	Acinetobacter nosocomialis M2	50.877	98.616	0.502
pilD	Vibrio campbellii strain DS40M4	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	52.174	87.543	0.457