Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA38_RS25905 Genome accession   NZ_CP111030
Coordinates   5537229..5537753 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PALA38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5532229..5542753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA38_RS25885 (PALA38_05114) pilR 5533491..5534828 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PALA38_RS25890 (PALA38_05115) thiO 5534874..5535968 (-) 1095 WP_033944813.1 glycine oxidase ThiO -
  PALA38_RS25895 (PALA38_05116) - 5536108..5536608 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  PALA38_RS25900 (PALA38_05117) - 5536731..5537219 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PALA38_RS25905 (PALA38_05118) pilV 5537229..5537753 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PALA38_RS25910 (PALA38_05119) - 5537762..5538577 (+) 816 WP_016562347.1 PilW family protein -
  PALA38_RS25915 (PALA38_05120) - 5538574..5539179 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  PALA38_RS25920 (PALA38_05121) - 5539193..5542669 (+) 3477 WP_023103514.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=757464 PALA38_RS25905 WP_003116261.1 5537229..5537753(+) (pilV) [Pseudomonas aeruginosa strain PALA38]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=757464 PALA38_RS25905 WP_003116261.1 5537229..5537753(+) (pilV) [Pseudomonas aeruginosa strain PALA38]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598