Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PHLH3_RS05375 Genome accession   NZ_AP021905
Coordinates   1133055..1134386 (-) Length   443 a.a.
NCBI ID   WP_213628479.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128055..1139386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS05345 (PHLH8_10650) - 1129184..1129663 (-) 480 WP_213628475.1 PilX N-terminal domain-containing pilus assembly protein -
  PHLH3_RS05350 (PHLH8_10660) - 1129663..1130316 (-) 654 WP_213628476.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PHLH3_RS05355 (PHLH8_10670) pilV 1130313..1130795 (-) 483 WP_213628477.1 type IV pilus modification protein PilV -
  PHLH3_RS05360 - 1130792..1131256 (-) 465 WP_213630413.1 GspH/FimT family pseudopilin -
  PHLH3_RS05365 - 1131355..1131870 (-) 516 WP_213630415.1 GspH/FimT family pseudopilin -
  PHLH3_RS05370 thiO 1131924..1133042 (+) 1119 WP_213628478.1 glycine oxidase ThiO -
  PHLH3_RS05375 (PHLH8_10690) pilR 1133055..1134386 (-) 1332 WP_213628479.1 sigma-54 dependent transcriptional regulator Regulator
  PHLH3_RS05380 (PHLH8_10700) pilS 1134389..1135981 (-) 1593 WP_244862983.1 ATP-binding protein Regulator
  PHLH3_RS05385 (PHLH8_10710) - 1135971..1136207 (-) 237 WP_213628481.1 PP0621 family protein -
  PHLH3_RS05390 (PHLH8_10720) - 1136388..1137407 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  PHLH3_RS05395 (PHLH8_10730) rluD 1137568..1138527 (+) 960 WP_213630417.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PHLH3_RS05400 (PHLH8_10740) pgeF 1138527..1139252 (+) 726 WP_213628482.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49411.63 Da        Isoelectric Point: 5.5835

>NTDB_id=75744 PHLH3_RS05375 WP_213628479.1 1133055..1134386(-) (pilR) [Pseudomonas sp. Pc102]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLGRLRELVAAALRLRTSGSGDTPMDNRLLGDSPPMKALRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAIRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCDNDQIQPEDLRLADAPSPSESGEADLAQVSNLEDYL
EEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=75744 PHLH3_RS05375 WP_213628479.1 1133055..1134386(-) (pilR) [Pseudomonas sp. Pc102]
ATGACCAGACAGAGAGCACTCATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGTGAACTCCTCGCCGCCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGACGGCACCGGCCTCGACCTCGTGCAGCACATCCAGCAGCGCCATCCGCAGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCCGTCAACGCACTGAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCTGTGGA
CCTCGGCCGGCTTCGCGAGCTGGTCGCTGCGGCCCTGCGCCTGCGCACCAGCGGCAGCGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCGCTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCCCCCGTCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCACGCATGATCCACGAGCAGGGCCCGCGCCACGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATCCCCTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTGGACGAAGTGGCAGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGTGCCATCCAGGAAAAGGCCATTCGCACCATAGGTGGCCAGCAGGAAGTGGTGGT
GGACGTACGCATTCTCAGCGCCACCCACAAGGACCTGGCTGCCGAAGTGGCGGCCGGACGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTCAGCGTCCCCCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGATGTGATG
CTCAAGCGCCTGGCTGCGGACAGCGCCGCGGCCAGCATCACCCGCGACGCCATGGAAAAGCTCAAGAGCTATCGCTTCCC
CGGCAACGTCCGCGAGCTGGAAAACATGCTCGAGCGGGCCTACACGCTCTGCGACAACGACCAGATCCAGCCCGAGGACC
TGCGCCTGGCCGACGCGCCCTCCCCGTCGGAAAGCGGCGAGGCCGACCTTGCGCAGGTCAGCAACCTCGAGGATTACCTG
GAAGAGATCGAGCGCAAGCTCATCATGCAGGCCCTGGAAGAAACTCGCTGGAACCGCACCGCCGCAGCCCAGCGCCTGGG
CCTGACCTTCCGCTCGATGCGCTACCGGCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.067

100

0.865
  pilR Acinetobacter baumannii strain A118

49.892

100

0.519
  luxO Vibrio cholerae strain A1552

37.557

99.774

0.375

Multiple sequence alignment