Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PHLH3_RS05380 Genome accession   NZ_AP021905
Coordinates   1134389..1135981 (-) Length   530 a.a.
NCBI ID   WP_244862983.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129389..1140981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS05350 (PHLH8_10660) - 1129663..1130316 (-) 654 WP_213628476.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PHLH3_RS05355 (PHLH8_10670) pilV 1130313..1130795 (-) 483 WP_213628477.1 type IV pilus modification protein PilV -
  PHLH3_RS05360 - 1130792..1131256 (-) 465 WP_213630413.1 GspH/FimT family pseudopilin -
  PHLH3_RS05365 - 1131355..1131870 (-) 516 WP_213630415.1 GspH/FimT family pseudopilin -
  PHLH3_RS05370 thiO 1131924..1133042 (+) 1119 WP_213628478.1 glycine oxidase ThiO -
  PHLH3_RS05375 (PHLH8_10690) pilR 1133055..1134386 (-) 1332 WP_213628479.1 sigma-54 dependent transcriptional regulator Regulator
  PHLH3_RS05380 (PHLH8_10700) pilS 1134389..1135981 (-) 1593 WP_244862983.1 ATP-binding protein Regulator
  PHLH3_RS05385 (PHLH8_10710) - 1135971..1136207 (-) 237 WP_213628481.1 PP0621 family protein -
  PHLH3_RS05390 (PHLH8_10720) - 1136388..1137407 (-) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  PHLH3_RS05395 (PHLH8_10730) rluD 1137568..1138527 (+) 960 WP_213630417.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PHLH3_RS05400 (PHLH8_10740) pgeF 1138527..1139252 (+) 726 WP_213628482.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58963.31 Da        Isoelectric Point: 8.9929

>NTDB_id=75745 PHLH3_RS05380 WP_244862983.1 1134389..1135981(-) (pilS) [Pseudomonas sp. Pc102]
MSGESTVLGGQPARRIFRLYNLYRLIIGLALVGLISSELDSELLDLARAQLFRNASWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVATIGMIYLTFYLSLSRPEVANQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDAQHRVLLANQGAQTLLGRDDLAGRIID
PQSPELVKRLQQWMDNPALRPQSLQAMPEGPVLQPSFVPLQRGEQRDTLIFLEDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELTGPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSFQKNKVGQVWLRLFRDPESDLPILEIMDDGAGVPPEQVQHIFEP
FYTTESKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=75745 PHLH3_RS05380 WP_244862983.1 1134389..1135981(-) (pilS) [Pseudomonas sp. Pc102]
GTGAGCGGTGAGTCGACGGTCCTGGGCGGGCAGCCGGCGCGGCGCATCTTCCGCCTCTACAACCTCTACCGGCTGATCAT
CGGCCTCGCGCTGGTCGGGCTGATCTCCAGCGAGCTGGACAGCGAATTGCTCGACCTCGCCCGCGCGCAACTGTTCCGCA
ACGCCTCCTGGTTCTACCTGCTGCTGAACATCCTGATCGCCTTGATGGTCCGCCATCCGAAGCACATGCTGCAGGTGTTC
AGCCTGGCACTCGTGGACGTGATCCTGTTGTCCTGCCTGTTCTACGCGGCCGGCGGTACGCCCAGCGGCATCGGCAACCT
GGTGATAGTCGCGGTGGCCATCGCCAACATCCTGCTGCGGGGCCGGGTCGGCCTGCTGATTGCCGCCGTCGCCACCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCGGAAGTCGCCAACCAGTACGTACAGGCCGGTGCGCTCGGC
GCCCTCTGTTTTGCGGCCGCACTCTTCGTCCAGGGCATCAGCAAACGCCTGCAACTGAGCGAGACCCTGGCGGAAAAGCG
CGCCGCCGACGTCGCCAACCTCGAGGCACTCAACGCCCTGATCCTGCAACGGATGCGCACCGGCATCCTGGTGCTCGACG
CGCAACACCGCGTGCTCCTGGCCAACCAGGGCGCCCAGACCCTGCTGGGCCGCGATGACCTCGCCGGGCGCATCATCGAC
CCGCAGAGCCCGGAACTGGTCAAGCGCCTCCAGCAGTGGATGGACAACCCCGCCCTGCGCCCGCAGAGCCTGCAGGCCAT
GCCCGAAGGCCCGGTGCTGCAACCCAGCTTCGTACCGCTGCAACGGGGCGAGCAGCGCGACACCCTGATCTTCCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTCGCCTCCCTCGGCCGCCTGACCGCCGGCATCGCCCATGAG
ATACGCAACCCCCTGGGCGCCATCAGCCATGCCGCGCAGCTTCTGCAGGAGTCGGAAGAGCTGACCGGCCCGGACCGACG
GCTGGCGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCACGCCGCCGCC
AGTCAGAGCCCCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAATGCTTCCGGCCCCGGC
CAGACACTGCACATCGAGACCAACAGCGGCACGATCCAGACCCGTATGGACCCGCACCAGCTGACCCAGGTACTGACCAA
CCTGGTACAGAACGGTCTGCGCTACAGTTTTCAGAAGAACAAGGTCGGACAGGTCTGGCTTCGCCTATTCCGTGATCCGG
AAAGCGACCTGCCCATCCTGGAGATCATGGATGATGGAGCCGGCGTGCCGCCCGAGCAGGTGCAGCACATCTTCGAACCC
TTCTACACGACTGAAAGCAAGGGTACCGGGCTCGGCCTGTATATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCCCGCCT
CGACTACCGCCCACGCGAAACCGGCGGCAGCTGTTTTCGCATTACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.038

100

0.66

Multiple sequence alignment