Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PHLH3_RS03540 Genome accession   NZ_AP021905
Coordinates   744357..744848 (+) Length   163 a.a.
NCBI ID   WP_173178835.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 739357..749848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS03530 (PHLH8_06970) uvrA 739910..742744 (-) 2835 WP_213628216.1 excinuclease ABC subunit UvrA -
  PHLH3_RS03535 (PHLH8_06980) - 742953..744347 (+) 1395 WP_173178834.1 MFS transporter -
  PHLH3_RS03540 (PHLH8_06990) ssb 744357..744848 (+) 492 WP_173178835.1 single-stranded DNA-binding protein Machinery gene
  PHLH3_RS03545 (PHLH8_07000) - 745095..746429 (+) 1335 WP_213628217.1 hypothetical protein -
  PHLH3_RS03550 (PHLH8_07010) - 746417..747628 (-) 1212 WP_213628218.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18207.20 Da        Isoelectric Point: 5.3338

>NTDB_id=75742 PHLH3_RS03540 WP_173178835.1 744357..744848(+) (ssb) [Pseudomonas sp. Pc102]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GTLRTREWEKDGVKRYTTEIVVDINGQMQLLGGRPGNDGDSAPRAPRPQREPQQSAPREQRPAPQPAAQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=75742 PHLH3_RS03540 WP_173178835.1 744357..744848(+) (ssb) [Pseudomonas sp. Pc102]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGCGGCGATCCCGAAGTCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACGTCACCCTGGCCACCAGCGAAAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAAGTCTATGTCGAA
GGCACCCTGCGCACCCGCGAATGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTCGTCGACATCAACGGCCA
GATGCAGCTGCTTGGCGGCCGTCCCGGCAACGATGGCGATTCCGCTCCCCGTGCCCCGCGTCCGCAGCGCGAGCCGCAAC
AGTCCGCCCCGCGCGAACAGCGTCCGGCTCCCCAGCCCGCTGCCCAGCCGGCCCCGGACTACGACAGCTTCGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.818

100

0.613
  ssb Glaesserella parasuis strain SC1401

51.099

100

0.571
  ssb Neisseria gonorrhoeae MS11

46.196

100

0.521
  ssb Neisseria meningitidis MC58

44.693

100

0.491

Multiple sequence alignment