Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OQ483_RS02330 | Genome accession | NZ_CP110985 |
| Coordinates | 478047..478532 (+) | Length | 161 a.a. |
| NCBI ID | WP_309257804.1 | Uniprot ID | - |
| Organism | Enterobacter bugandensis strain E105227 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 465198..526300 | 478047..478532 | within | 0 |
Gene organization within MGE regions
Location: 465198..526300
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQ483_RS02260 (OQ483_02250) | - | 465338..466255 (+) | 918 | WP_309257794.1 | ParA family protein | - |
| OQ483_RS02265 (OQ483_02255) | - | 466252..466917 (+) | 666 | WP_309257795.1 | hypothetical protein | - |
| OQ483_RS02270 (OQ483_02260) | dnaB-PI | 466910..468259 (+) | 1350 | WP_309257796.1 | SPI-7-type island replicative DNA helicase | - |
| OQ483_RS02275 (OQ483_02265) | - | 468262..469998 (+) | 1737 | WP_309257797.1 | ParB family protein | - |
| OQ483_RS02280 (OQ483_02270) | - | 469998..470720 (+) | 723 | WP_309257798.1 | DUF2786 domain-containing protein | - |
| OQ483_RS02285 (OQ483_02275) | - | 470717..470938 (+) | 222 | WP_309257799.1 | hypothetical protein | - |
| OQ483_RS02290 (OQ483_02280) | - | 470931..471560 (+) | 630 | WP_309257800.1 | DUF2857 domain-containing protein | - |
| OQ483_RS02295 (OQ483_02285) | - | 471557..471820 (+) | 264 | WP_171887597.1 | hypothetical protein | - |
| OQ483_RS02300 (OQ483_02290) | - | 471934..473208 (+) | 1275 | WP_309257801.1 | STY4528 family pathogenicity island replication protein | - |
| OQ483_RS02305 (OQ483_02295) | - | 473216..473446 (+) | 231 | WP_309257802.1 | hypothetical protein | - |
| OQ483_RS02310 (OQ483_02300) | - | 473466..474209 (+) | 744 | WP_197784807.1 | PFL_4669 family integrating conjugative element protein | - |
| OQ483_RS02315 (OQ483_02305) | - | 474206..474778 (+) | 573 | WP_197806364.1 | hypothetical protein | - |
| OQ483_RS02320 (OQ483_02310) | - | 474792..476831 (+) | 2040 | WP_309257803.1 | DNA topoisomerase III | - |
| OQ483_RS02325 (OQ483_02315) | - | 477507..477974 (+) | 468 | WP_060558277.1 | STY4534 family ICE replication protein | - |
| OQ483_RS02330 (OQ483_02320) | ssb | 478047..478532 (+) | 486 | WP_309257804.1 | single-stranded DNA-binding protein | Machinery gene |
| OQ483_RS02335 (OQ483_02325) | - | 478611..479051 (+) | 441 | WP_099784035.1 | DUF29 domain-containing protein | - |
| OQ483_RS02340 (OQ483_02330) | - | 479197..479841 (+) | 645 | WP_309257805.1 | PilL N-terminal domain-containing protein | - |
| OQ483_RS02345 (OQ483_02335) | - | 479838..480581 (+) | 744 | WP_309257806.1 | hypothetical protein | - |
| OQ483_RS02350 (OQ483_02340) | - | 480592..481302 (+) | 711 | WP_309258319.1 | TIGR03759 family integrating conjugative element protein | - |
| OQ483_RS02355 (OQ483_02345) | - | 481281..481973 (+) | 693 | WP_309257807.1 | transglycosylase SLT domain-containing protein | - |
| OQ483_RS02360 (OQ483_02350) | - | 481976..482500 (+) | 525 | WP_309257808.1 | integrating conjugative element protein | - |
| OQ483_RS02365 (OQ483_02355) | - | 482497..483132 (+) | 636 | WP_309257809.1 | restriction endonuclease | - |
| OQ483_RS02370 (OQ483_02360) | - | 483129..483902 (+) | 774 | WP_309257810.1 | hypothetical protein | - |
| OQ483_RS02375 (OQ483_02365) | traD | 483899..486013 (+) | 2115 | WP_309257811.1 | type IV conjugative transfer system coupling protein TraD | - |
| OQ483_RS02380 (OQ483_02370) | - | 485994..486752 (+) | 759 | WP_309257812.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| OQ483_RS02385 (OQ483_02375) | - | 486977..487306 (+) | 330 | WP_309257813.1 | RAQPRD family integrative conjugative element protein | - |
| OQ483_RS02390 (OQ483_02380) | - | 487306..487548 (+) | 243 | WP_309257814.1 | TIGR03758 family integrating conjugative element protein | - |
| OQ483_RS02395 (OQ483_02385) | - | 487612..487977 (+) | 366 | WP_309257815.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| OQ483_RS02400 (OQ483_02390) | - | 487989..488354 (+) | 366 | WP_309257816.1 | TIGR03750 family conjugal transfer protein | - |
| OQ483_RS02405 (OQ483_02395) | - | 488351..489022 (+) | 672 | WP_309257817.1 | PFL_4703 family integrating conjugative element protein | - |
| OQ483_RS02410 (OQ483_02400) | - | 489019..489930 (+) | 912 | WP_309257818.1 | TIGR03749 family integrating conjugative element protein | - |
| OQ483_RS02415 (OQ483_02405) | - | 489923..491422 (+) | 1500 | WP_309257819.1 | TIGR03752 family integrating conjugative element protein | - |
| OQ483_RS02420 (OQ483_02410) | - | 491452..491877 (+) | 426 | WP_309257820.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| OQ483_RS02425 (OQ483_02415) | - | 491877..494735 (+) | 2859 | WP_309258320.1 | conjugative transfer ATPase | - |
| OQ483_RS02430 (OQ483_02420) | - | 494732..495136 (+) | 405 | WP_309257821.1 | acetyltransferase | - |
| OQ483_RS02440 (OQ483_02430) | - | 496033..499293 (+) | 3261 | WP_309257822.1 | hypothetical protein | - |
| OQ483_RS02445 (OQ483_02435) | - | 499477..499881 (+) | 405 | WP_309257823.1 | TIGR03757 family integrating conjugative element protein | - |
| OQ483_RS02450 (OQ483_02440) | - | 499883..500890 (+) | 1008 | WP_309257824.1 | TIGR03756 family integrating conjugative element protein | - |
| OQ483_RS02455 (OQ483_02445) | - | 500901..502382 (+) | 1482 | WP_309258321.1 | integrating conjugative element protein | - |
| OQ483_RS02460 (OQ483_02450) | - | 502399..502770 (+) | 372 | WP_309257825.1 | hypothetical protein | - |
| OQ483_RS02465 (OQ483_02455) | - | 502767..504305 (+) | 1539 | WP_309257826.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| OQ483_RS02470 (OQ483_02460) | - | 504345..504752 (-) | 408 | WP_309257827.1 | hypothetical protein | - |
| OQ483_RS25785 | - | 505120..505386 (-) | 267 | WP_373569557.1 | transposase family protein | - |
| OQ483_RS02480 (OQ483_02470) | - | 506025..508172 (+) | 2148 | WP_309257828.1 | phosphatidylinositol-specific phospholipase C domain-containing protein | - |
| OQ483_RS02485 (OQ483_02475) | - | 508368..509212 (+) | 845 | WP_309257829.1 | IS5 family transposase | - |
| OQ483_RS02490 (OQ483_02480) | - | 509598..510479 (-) | 882 | WP_309257830.1 | hypothetical protein | - |
| OQ483_RS02500 (OQ483_02490) | - | 513623..514510 (+) | 888 | WP_309257832.1 | integrase domain-containing protein | - |
| OQ483_RS02505 (OQ483_02495) | - | 514560..515369 (-) | 810 | WP_309257833.1 | hypothetical protein | - |
| OQ483_RS02510 (OQ483_02500) | - | 515974..516315 (+) | 342 | WP_309257834.1 | hypothetical protein | - |
| OQ483_RS02515 (OQ483_02505) | - | 516406..516771 (+) | 366 | WP_309257835.1 | hypothetical protein | - |
| OQ483_RS02520 (OQ483_02510) | - | 516881..517804 (+) | 924 | WP_309257836.1 | DUF1281 domain-containing protein | - |
| OQ483_RS02525 (OQ483_02515) | - | 517945..518640 (+) | 696 | WP_309257837.1 | N-6 DNA methylase | - |
| OQ483_RS02530 (OQ483_02520) | queF | 518737..519573 (-) | 837 | WP_309257838.1 | NADPH-dependent 7-cyano-7-deazaguanine reductase QueF | - |
| OQ483_RS02535 (OQ483_02525) | - | 519564..520439 (-) | 876 | WP_309257839.1 | queuosine precursor transporter | - |
| OQ483_RS02540 (OQ483_02530) | - | 520472..521083 (-) | 612 | WP_309258322.1 | helix-turn-helix domain-containing protein | - |
| OQ483_RS02545 (OQ483_02535) | - | 521832..523280 (+) | 1449 | WP_309257840.1 | UvrD-helicase domain-containing protein | - |
| OQ483_RS02550 (OQ483_02540) | - | 523274..524974 (+) | 1701 | WP_309257841.1 | TraI domain-containing protein | - |
| OQ483_RS02555 (OQ483_02545) | - | 525042..526055 (+) | 1014 | WP_309257842.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17495.45 Da Isoelectric Point: 5.6811
>NTDB_id=757287 OQ483_RS02330 WP_309257804.1 478047..478532(+) (ssb) [Enterobacter bugandensis strain E105227]
MASRGVNKVILVGHLGQDPEVRYMPNGGAVATLPLATSETWRDKQSGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGALRTRKWADQSGQDRYTTEVVINVGGTMQMLGGRSQTDNPGPSASGSWGQPQQPTHSGTPPQASAGNEPPMDFDDDIP
F
MASRGVNKVILVGHLGQDPEVRYMPNGGAVATLPLATSETWRDKQSGEQKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGALRTRKWADQSGQDRYTTEVVINVGGTMQMLGGRSQTDNPGPSASGSWGQPQQPTHSGTPPQASAGNEPPMDFDDDIP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=757287 OQ483_RS02330 WP_309257804.1 478047..478532(+) (ssb) [Enterobacter bugandensis strain E105227]
ATGGCGTCTCGCGGCGTAAACAAAGTCATACTTGTCGGTCACCTTGGCCAGGATCCGGAAGTCCGTTACATGCCAAATGG
TGGTGCGGTTGCCACCCTGCCGCTTGCGACCTCCGAGACCTGGCGTGATAAACAATCCGGCGAACAGAAAGAAAAAACCG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTCGCTGAAATTGCCGGCGAATACTTGCGTAAAGGTTCGCAGGTCTATATT
GAAGGCGCTTTGCGCACGCGTAAATGGGCAGATCAGAGCGGCCAGGATCGCTACACTACTGAGGTAGTCATTAACGTGGG
CGGCACGATGCAGATGCTGGGTGGTCGTAGTCAGACCGATAACCCGGGGCCCTCAGCGTCTGGTAGTTGGGGGCAACCTC
AGCAACCGACCCACAGTGGTACACCCCCTCAGGCGTCTGCCGGCAATGAACCGCCGATGGACTTTGATGATGACATCCCA
TTTTGA
ATGGCGTCTCGCGGCGTAAACAAAGTCATACTTGTCGGTCACCTTGGCCAGGATCCGGAAGTCCGTTACATGCCAAATGG
TGGTGCGGTTGCCACCCTGCCGCTTGCGACCTCCGAGACCTGGCGTGATAAACAATCCGGCGAACAGAAAGAAAAAACCG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTCGCTGAAATTGCCGGCGAATACTTGCGTAAAGGTTCGCAGGTCTATATT
GAAGGCGCTTTGCGCACGCGTAAATGGGCAGATCAGAGCGGCCAGGATCGCTACACTACTGAGGTAGTCATTAACGTGGG
CGGCACGATGCAGATGCTGGGTGGTCGTAGTCAGACCGATAACCCGGGGCCCTCAGCGTCTGGTAGTTGGGGGCAACCTC
AGCAACCGACCCACAGTGGTACACCCCCTCAGGCGTCTGCCGGCAATGAACCGCCGATGGACTTTGATGATGACATCCCA
TTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
70.056 |
100 |
0.77 |
| ssb | Glaesserella parasuis strain SC1401 |
52.486 |
100 |
0.59 |
| ssb | Neisseria meningitidis MC58 |
43.503 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
43.503 |
100 |
0.478 |