Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQ483_RS01940 Genome accession   NZ_CP110985
Coordinates   405534..406094 (+) Length   186 a.a.
NCBI ID   WP_309257742.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain E105227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 394873..419614 405534..406094 within 0


Gene organization within MGE regions


Location: 394873..419614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ483_RS01890 (OQ483_01880) dnaB-PI 394873..396243 (+) 1371 WP_309257735.1 SPI-7-type island replicative DNA helicase -
  OQ483_RS01895 (OQ483_01885) - 396240..397904 (+) 1665 WP_309257736.1 ParB family protein -
  OQ483_RS01900 (OQ483_01890) - 397897..398619 (+) 723 WP_309258316.1 DUF2786 domain-containing protein -
  OQ483_RS01905 (OQ483_01895) - 398616..399041 (+) 426 WP_309257737.1 hypothetical protein -
  OQ483_RS01910 (OQ483_01900) - 399083..399646 (+) 564 WP_121554946.1 DUF2857 domain-containing protein -
  OQ483_RS25775 - 399643..399891 (+) 249 WP_116523484.1 hypothetical protein -
  OQ483_RS01915 (OQ483_01905) - 399982..401220 (+) 1239 WP_309257738.1 STY4528 family pathogenicity island replication protein -
  OQ483_RS01920 (OQ483_01910) - 401180..401470 (-) 291 WP_309257739.1 hypothetical protein -
  OQ483_RS01925 (OQ483_01915) - 401541..402296 (+) 756 WP_309257740.1 PFL_4669 family integrating conjugative element protein -
  OQ483_RS01930 (OQ483_01920) - 402310..404340 (+) 2031 WP_309257741.1 DNA topoisomerase III -
  OQ483_RS01935 (OQ483_01925) - 404991..405455 (+) 465 WP_041908199.1 STY4534 family ICE replication protein -
  OQ483_RS01940 (OQ483_01930) ssb 405534..406094 (+) 561 WP_309257742.1 single-stranded DNA-binding protein Machinery gene
  OQ483_RS01945 (OQ483_01935) - 406108..406344 (+) 237 WP_016190698.1 DUF4160 domain-containing protein -
  OQ483_RS01950 (OQ483_01940) - 406325..406588 (+) 264 WP_071993688.1 DUF2442 domain-containing protein -
  OQ483_RS01955 (OQ483_01945) - 406727..407323 (+) 597 WP_309257743.1 PilL N-terminal domain-containing protein -
  OQ483_RS01960 (OQ483_01950) - 407320..408042 (+) 723 WP_309257744.1 hypothetical protein -
  OQ483_RS01965 (OQ483_01955) - 408049..408753 (+) 705 WP_309257745.1 TIGR03759 family integrating conjugative element protein -
  OQ483_RS01970 (OQ483_01960) - 408732..409406 (+) 675 WP_309257746.1 transglycosylase SLT domain-containing protein -
  OQ483_RS01975 (OQ483_01965) - 409406..409912 (+) 507 WP_309257747.1 integrating conjugative element protein -
  OQ483_RS01980 (OQ483_01970) - 409909..410511 (+) 603 WP_309257748.1 restriction endonuclease -
  OQ483_RS01985 (OQ483_01975) - 410633..411430 (+) 798 WP_309257749.1 hypothetical protein -
  OQ483_RS01990 (OQ483_01980) traD 411427..413517 (+) 2091 WP_309257750.1 type IV conjugative transfer system coupling protein TraD -
  OQ483_RS01995 (OQ483_01985) - 413510..414268 (+) 759 WP_309257751.1 TIGR03747 family integrating conjugative element membrane protein -
  OQ483_RS02000 (OQ483_01990) - 414401..415915 (-) 1515 WP_309257752.1 transposase family protein -
  OQ483_RS02005 (OQ483_01995) - 416363..418726 (-) 2364 WP_309257753.1 serine protease -
  OQ483_RS02010 (OQ483_02000) - 419031..419372 (+) 342 WP_309257754.1 RAQPRD family integrative conjugative element protein -
  OQ483_RS02015 (OQ483_02005) - 419372..419614 (+) 243 WP_016190712.1 TIGR03758 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20375.59 Da        Isoelectric Point: 7.0614

>NTDB_id=757286 OQ483_RS01940 WP_309257742.1 405534..406094(+) (ssb) [Enterobacter bugandensis strain E105227]
MASRGINKVILVGHLGQDPEVRYMPNSNAVTTLSIATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWQDQHGQDRYSTEVVVNVNGSMQMLGSRQHSGSSLSQHQGSQQQGWGQPQQPVSGGQPSQVGPSSTGSSAAG
MPMDFDDDIPFIGCGYGVNRVTIHAN

Nucleotide


Download         Length: 561 bp        

>NTDB_id=757286 OQ483_RS01940 WP_309257742.1 405534..406094(+) (ssb) [Enterobacter bugandensis strain E105227]
ATGGCTTCACGTGGAATTAATAAAGTCATTCTCGTCGGACATTTAGGCCAGGATCCTGAAGTGCGCTATATGCCCAACAG
TAACGCAGTGACCACGCTGTCGATCGCGACTTCAGAGAGCTGGCGCGATAAGCAAACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGCTCACAAGTGTATATT
GAAGGCCAGTTACGTACCCGTAAATGGCAGGATCAGCATGGCCAGGATCGTTATTCTACCGAAGTGGTGGTCAACGTGAA
CGGTAGCATGCAGATGCTGGGTAGTCGTCAGCACTCGGGCAGCTCCCTCTCTCAACACCAGGGCTCTCAACAGCAGGGAT
GGGGACAACCTCAGCAGCCTGTATCAGGTGGTCAGCCGTCCCAGGTTGGGCCGTCGTCAACCGGAAGCTCTGCTGCCGGC
ATGCCGATGGATTTTGACGACGACATCCCCTTTATCGGTTGTGGCTATGGCGTTAATCGCGTGACCATACACGCAAACTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

95.161

0.634
  ssb Glaesserella parasuis strain SC1401

52.973

99.462

0.527
  ssb Neisseria meningitidis MC58

42.614

94.624

0.403
  ssb Neisseria gonorrhoeae MS11

42.614

94.624

0.403