Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI243_RS29205 Genome accession   NZ_AP021904
Coordinates   6602372..6602896 (-) Length   174 a.a.
NCBI ID   WP_212810185.1    Uniprot ID   -
Organism   Pseudomonas sp. Ost2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6597372..6607896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS29190 (PHLH7_57610) - 6598000..6599889 (+) 1890 WP_212810184.1 MAC/perforin domain-containing protein -
  KI243_RS29195 (PHLH7_57620) - 6599963..6600844 (+) 882 WP_244861789.1 hypothetical protein -
  KI243_RS29200 - 6601375..6601869 (+) 495 WP_177107393.1 RICIN domain-containing protein -
  KI243_RS29205 (PHLH7_57630) ssb 6602372..6602896 (-) 525 WP_212810185.1 single-stranded DNA-binding protein Machinery gene
  KI243_RS29210 (PHLH7_57640) - 6602906..6604303 (-) 1398 WP_017123258.1 MFS transporter -
  KI243_RS29215 (PHLH7_57650) uvrA 6604494..6607328 (+) 2835 WP_177107394.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19384.59 Da        Isoelectric Point: 5.9405

>NTDB_id=75725 KI243_RS29205 WP_212810185.1 6602372..6602896(-) (ssb) [Pseudomonas sp. Ost2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQQGDQQGGGYDQSVPRQQAPRQQAPRPQQSAPQQSRPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=75725 KI243_RS29205 WP_212810185.1 6602372..6602896(-) (ssb) [Pseudomonas sp. Ost2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTCTCGATGTTCGGCAAGGTCGCCGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCTACGATCAGTCCGTGCCACGCCAGCAAG
CCCCTCGCCAGCAGGCGCCGCGTCCACAGCAGTCGGCTCCGCAGCAGTCGCGCCCAGCTCCACAGCAGGCCGCACCGCAG
CCGGCTCCGGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.742

100

0.58
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.517
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489

Multiple sequence alignment