Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KI243_RS28090 Genome accession   NZ_AP021904
Coordinates   6355210..6356553 (+) Length   447 a.a.
NCBI ID   WP_177064947.1    Uniprot ID   -
Organism   Pseudomonas sp. Ost2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6350210..6361553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS28065 (PHLH7_55350) pgeF 6350350..6351075 (-) 726 WP_177118160.1 peptidoglycan editing factor PgeF -
  KI243_RS28070 (PHLH7_55360) rluD 6351072..6352034 (-) 963 WP_042934227.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI243_RS28075 (PHLH7_55370) - 6352185..6353201 (+) 1017 WP_017123477.1 outer membrane protein assembly factor BamD -
  KI243_RS28080 (PHLH7_55380) - 6353395..6353628 (+) 234 WP_177064949.1 PP0621 family protein -
  KI243_RS28085 (PHLH7_55390) pilS 6353618..6355207 (+) 1590 WP_017123475.1 ATP-binding protein Regulator
  KI243_RS28090 (PHLH7_55400) pilR 6355210..6356553 (+) 1344 WP_177064947.1 sigma-54 dependent transcriptional regulator Regulator
  KI243_RS28095 (PHLH7_55410) thiO 6356821..6357921 (-) 1101 WP_017123473.1 glycine oxidase ThiO -
  KI243_RS28100 (PHLH7_55420) - 6357969..6358382 (-) 414 WP_017123472.1 type IV pilin protein -
  KI243_RS28105 (PHLH7_55430) - 6358395..6361532 (-) 3138 WP_212810141.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49832.99 Da        Isoelectric Point: 6.4144

>NTDB_id=75723 KI243_RS28090 WP_177064947.1 6355210..6356553(+) (pilR) [Pseudomonas sp. Ost2]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTQSARNVGEAREKLARDSFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKSGAFDFLTKPVDLARLRELVASALRLPLAGEKPPSIDNRLLGDSLPMRALRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSVGGQQEEVVDVRILCATHKDLNGEVSAGRFRQDLYYRLNVIELRVPSLRERRDDIEPLATN
VLKRLASGSGQPAARLHPHALDTLKGYRFPGNVRELENMLERAYTLCENEQIEASDLRLAQAEGNNAEPGEPSLAQIDNL
EDYLESIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=75723 KI243_RS28090 WP_177064947.1 6355210..6356553(+) (pilR) [Pseudomonas sp. Ost2]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACTCTGGGCCGGAT
GAAACTCGATACCCAGAGCGCCCGCAACGTCGGCGAAGCCCGGGAAAAACTGGCCCGGGACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGTACGGGGCTGGAACTGGTCCAGCACATCCAGCAGCGCCACCCCCAGGTGCCCGTGGCG
ATGATCACCGCCTACGGCAGCCTGGACACCGCGATCAACGCACTCAAGTCCGGCGCCTTCGACTTCCTGACCAAGCCGGT
GGATCTCGCCCGCTTGCGGGAGCTGGTCGCCAGTGCCTTGCGCCTGCCGCTGGCCGGTGAAAAACCACCGTCCATCGATA
ACCGCCTGCTGGGCGATTCGCTGCCTATGCGCGCCCTGCGCAAGCAGATCGACAAGCTGGCCCGCAGTCAGGCGCCGGTG
TATATCAGTGGCGAATCAGGCAGCGGCAAGGAACTGGTGGCACGCCTGATCCACGAGCAAGGGCCCCGCGCCGAGCGCCC
GTTCGTGCCGGTCAACTGCGGGGCGATTCCTTCGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCGTCGAAGACAAGCCCGGATTGTTCCAGGCCGCCAACGGCGGCACCCTGTTTCTCGATGAGGTCGCCGACCTG
CCCCTGGCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAGGCCGTGCGCAGTGTCGGCGGTCAGCAGGAGGAAGT
GGTGGATGTGCGGATCCTGTGCGCCACCCACAAGGACCTGAACGGCGAAGTCAGCGCCGGACGCTTTCGCCAGGACCTGT
ATTACCGGCTGAACGTCATCGAGCTGCGGGTGCCCTCGCTGCGCGAACGCCGCGACGATATCGAGCCACTGGCGACCAAT
GTGCTCAAGCGCCTGGCCTCGGGCAGCGGGCAACCTGCCGCCAGGCTGCACCCCCATGCCCTGGATACCCTCAAGGGTTA
TCGCTTTCCCGGTAACGTGCGCGAACTGGAGAATATGCTCGAACGAGCCTACACCCTGTGCGAGAACGAGCAGATCGAAG
CCAGCGACCTGCGACTGGCGCAAGCCGAGGGCAATAACGCCGAGCCCGGGGAGCCGAGCCTGGCGCAGATCGATAACCTG
GAAGACTACCTGGAAAGCATCGAGCGCAAGCTGATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCGGCGGC
CCAGCGACTGAATCTGTCATTCCGCTCGATGCGATATCGCCTCAAGAAACTGGGGCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

82.735

99.776

0.825
  pilR Acinetobacter baumannii strain A118

48.584

100

0.499
  luxO Vibrio cholerae strain A1552

38.17

100

0.383

Multiple sequence alignment