Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KI243_RS28085 Genome accession   NZ_AP021904
Coordinates   6353618..6355207 (+) Length   529 a.a.
NCBI ID   WP_017123475.1    Uniprot ID   A0A7Y7Y3B4
Organism   Pseudomonas sp. Ost2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6348618..6360207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI243_RS28065 (PHLH7_55350) pgeF 6350350..6351075 (-) 726 WP_177118160.1 peptidoglycan editing factor PgeF -
  KI243_RS28070 (PHLH7_55360) rluD 6351072..6352034 (-) 963 WP_042934227.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI243_RS28075 (PHLH7_55370) - 6352185..6353201 (+) 1017 WP_017123477.1 outer membrane protein assembly factor BamD -
  KI243_RS28080 (PHLH7_55380) - 6353395..6353628 (+) 234 WP_177064949.1 PP0621 family protein -
  KI243_RS28085 (PHLH7_55390) pilS 6353618..6355207 (+) 1590 WP_017123475.1 ATP-binding protein Regulator
  KI243_RS28090 (PHLH7_55400) pilR 6355210..6356553 (+) 1344 WP_177064947.1 sigma-54 dependent transcriptional regulator Regulator
  KI243_RS28095 (PHLH7_55410) thiO 6356821..6357921 (-) 1101 WP_017123473.1 glycine oxidase ThiO -
  KI243_RS28100 (PHLH7_55420) - 6357969..6358382 (-) 414 WP_017123472.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58329.32 Da        Isoelectric Point: 6.6143

>NTDB_id=75722 KI243_RS28085 WP_017123475.1 6353618..6355207(+) (pilS) [Pseudomonas sp. Ost2]
MTAETLSLEGSQAQRLLRLYHLYRLSIGVALVLLISSKMDDKLLELADGELFRTGSWIYLILNILVVVLLENPKRQAQVF
SLALADAIMLSGLFYAAGGTPSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYLSFSRPAAANYYVQAGLLG
ALCFAAALLVQGLTRLLIVSDTLAEQRASDVTNLEALNALILQRMRTGILVLDAEYRAQLANPSVLALLGQTDVIGQSIE
SCSPELIARLRLWQSNPTLRPQSLKIAGGSAVLQPAFIALQRGEQQQTLVFLEDLSQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELQGPDRRLTQIIQDQSKRMNLVIENVLQLSRRRPAEPQLLDLGTWLETFVSEWRERARPN
QQLHLEIGSAWLQTRADPLQLTQVLNNLLENGLRYSAQLHDQAEVWLKLSLEQKNELPTLEVLDNGPGVAPEQLQHLFEP
FFTTESQGTGLGLYLSRELCESNQARLDYSRRQGGSCFRITFAHARKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=75722 KI243_RS28085 WP_017123475.1 6353618..6355207(+) (pilS) [Pseudomonas sp. Ost2]
GTGACCGCTGAGACCCTCAGTCTCGAAGGCTCCCAGGCACAACGCCTGCTGCGGCTCTATCACCTGTATCGCCTGAGCAT
CGGCGTGGCCCTGGTCCTGCTGATTTCCAGCAAGATGGACGACAAGTTGCTGGAGCTGGCCGACGGCGAGCTGTTTCGCA
CCGGCAGCTGGATCTACCTGATCCTGAATATCCTGGTAGTGGTGCTGCTGGAAAACCCCAAGCGCCAGGCCCAGGTCTTC
AGCCTGGCGCTGGCCGACGCCATCATGCTCTCCGGCCTGTTCTATGCCGCCGGCGGCACACCCAGCGGGATCGGCAACCT
GCTGATCGCCTCGGTGGCGATCAGCAACGTGCTGCTGCGTGGTCGTATCGGCCTGTTGATTGCCGCCGTATCGGCCATCG
GCATTATCTACCTGACCTTCTACCTGAGCTTCAGCCGCCCGGCAGCCGCCAACTACTACGTACAGGCCGGGCTGCTCGGC
GCCCTGTGCTTTGCCGCGGCGCTGCTCGTCCAGGGCCTGACCCGCCTGCTGATCGTGAGCGATACCCTGGCCGAACAGCG
CGCCAGTGACGTGACCAACCTCGAAGCGCTCAATGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTACTCGATG
CCGAGTACCGCGCCCAACTGGCCAACCCCAGCGTCCTCGCACTGCTGGGCCAGACCGATGTCATCGGGCAATCGATCGAA
AGCTGCTCGCCAGAGCTGATCGCCCGCCTGCGCCTGTGGCAAAGCAATCCCACGTTGCGCCCGCAAAGCCTGAAAATCGC
CGGTGGCAGCGCCGTGCTGCAGCCCGCGTTCATCGCACTGCAGCGTGGTGAGCAACAGCAAACGCTGGTTTTCCTCGAGG
ACCTGTCGCAGATCGCCCAACAGGCCCAGCAACTCAAGCTCGCCGCCCTGGGCCGCCTGACCGCCGGTATCGCCCACGAA
ATCCGCAACCCCCTGGGTGCCGTCAGCCACGCCGCCCAGCTGCTGCAGGAGTCGGAGGAACTGCAAGGTCCTGACCGGCG
TCTCACGCAAATAATCCAGGATCAGTCCAAGCGCATGAATCTGGTGATCGAGAATGTACTCCAGCTGTCCCGTCGGCGAC
CCGCCGAACCGCAGTTGCTCGACCTGGGCACCTGGCTGGAGACCTTTGTCAGCGAATGGCGCGAACGGGCCCGACCGAAC
CAGCAACTCCACCTGGAGATCGGCAGTGCCTGGCTGCAAACCCGCGCCGACCCGCTACAGTTGACACAGGTATTGAACAA
CCTGCTGGAAAACGGCCTGCGCTACAGTGCCCAGTTGCATGATCAGGCCGAGGTCTGGCTGAAGCTGTCGCTGGAACAGA
AGAATGAACTGCCGACCCTGGAAGTACTGGATAATGGCCCCGGCGTCGCCCCCGAACAGCTGCAGCACCTGTTCGAGCCG
TTCTTCACCACCGAAAGCCAGGGCACGGGCCTGGGCCTGTACCTGTCCCGCGAGTTATGCGAAAGCAACCAGGCCCGCCT
GGACTACTCCAGGCGCCAAGGCGGCAGTTGCTTTCGCATCACCTTCGCTCACGCACGCAAACAGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7Y3B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.585

100

0.637

Multiple sequence alignment