Detailed information NTG0756951

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OOT43_RS20160
• Genome accession: NZ_CP110921
• Coordinates: 4290609..4291487 (+)
• Length: 292 a.a.
• NCBI ID: WP_266022505.1
• Uniprot ID: -
• Organism: Methylococcus mesophilus strain 16-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4285609..4296487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OOT43_RS20150 (OOT43_20150)	pilB	4287664..4289379 (+)	1716	WP_266022503.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OOT43_RS20155 (OOT43_20155)	pilC	4289384..4290598 (+)	1215	WP_266022504.1	type II secretion system F family protein	Machinery gene
OOT43_RS20160 (OOT43_20160)	pilD	4290609..4291487 (+)	879	WP_266022505.1	A24 family peptidase	Machinery gene
OOT43_RS20165 (OOT43_20165)	coaE	4291495..4292091 (+)	597	WP_266022506.1	dephospho-CoA kinase	-
OOT43_RS20170 (OOT43_20170)	zapD	4292193..4292960 (+)	768	WP_266022507.1	cell division protein ZapD	-
OOT43_RS20175 (OOT43_20175)	yacG	4292972..4293187 (+)	216	WP_266022508.1	DNA gyrase inhibitor YacG	-
OOT43_RS20180 (OOT43_20180)	cysG	4293226..4294626 (-)	1401	WP_266022509.1	siroheme synthase CysG	-
OOT43_RS20185 (OOT43_20185)	-	4294674..4294904 (+)	231	WP_266022510.1	sulfurtransferase TusA family protein	-
OOT43_RS20190 (OOT43_20190)	-	4294912..4295574 (-)	663	WP_266022511.1	HAD family phosphatase	-
OOT43_RS20195 (OOT43_20195)	-	4295766..4296341 (+)	576	WP_266022512.1	RNA pyrophosphohydrolase	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32008.76 Da
• Isoelectric Point: 6.4754

>NTDB_id=756951 OOT43_RS20160 WP_266022505.1 4290609..4291487(+) (pilD) [Methylococcus mesophilus strain 16-5]
MTDFILFPEGLALIALCGLFGLIIGSFLNVVIHRVPLMMERTWRRECREFLEPGVEHPSGEPEYNLWRPGSQCPHCQAPI
RFWQNVPLLSYLWLRGRCAACGTAISWRYPLVEMLTGVLFATVAWHFGASWQALAASGLTAGLIGLAFIDLDHLVLPDNI
TLPILWLGLLLNAQGLFCTLETALYGAVAGYLLLWTVHRGFLLLTGREGMGFGDFKLLAMLGAWLGWPMLPVIILFSSIS
GAVIGSIALAVGGKDRDTPIPFGPFLAAGGWIALLWGNALNDVYWRWASVGG

Nucleotide

• Length: 879 bp

>NTDB_id=756951 OOT43_RS20160 WP_266022505.1 4290609..4291487(+) (pilD) [Methylococcus mesophilus strain 16-5]
TTGACTGACTTTATTTTGTTTCCGGAGGGGCTGGCGTTGATCGCGCTCTGCGGCCTGTTCGGACTGATCATCGGCAGTTT
TCTCAACGTGGTCATCCATCGCGTGCCGCTGATGATGGAACGGACCTGGCGCAGGGAGTGCCGGGAATTTCTCGAGCCCG
GTGTTGAGCACCCTTCCGGTGAGCCCGAATACAATCTGTGGAGGCCGGGATCGCAGTGTCCGCATTGCCAGGCGCCGATC
CGGTTCTGGCAGAATGTCCCGCTGCTCAGCTATCTCTGGCTTCGCGGCCGTTGTGCCGCCTGCGGCACGGCAATTTCCTG
GCGTTATCCTCTGGTCGAGATGCTCACGGGGGTGCTGTTCGCCACGGTGGCCTGGCATTTCGGCGCGTCCTGGCAAGCTC
TGGCCGCGTCCGGCCTGACGGCGGGCCTGATCGGACTGGCCTTCATCGATCTCGATCACCTAGTGCTCCCGGACAACATC
ACGCTTCCTATACTTTGGCTGGGGCTGCTGCTGAACGCCCAAGGTCTCTTCTGTACCTTGGAGACGGCGCTGTACGGCGC
CGTTGCCGGCTATCTCCTGCTGTGGACGGTGCATCGCGGTTTTCTGCTGCTGACCGGACGCGAGGGCATGGGCTTCGGCG
ACTTCAAGCTGCTCGCGATGCTGGGAGCCTGGTTGGGCTGGCCGATGCTGCCGGTGATCATCCTGTTCTCATCGATCTCC
GGGGCGGTGATCGGTTCGATTGCGCTGGCGGTGGGCGGAAAGGATAGGGATACCCCGATCCCCTTCGGGCCGTTTCTGGC
GGCTGGCGGCTGGATCGCCCTGCTGTGGGGAAACGCACTCAACGATGTCTACTGGCGCTGGGCCAGTGTCGGAGGCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.381	93.493	0.49
pilD	Neisseria gonorrhoeae MS11	50.183	93.493	0.469
pilD	Acinetobacter nosocomialis M2	46.69	98.288	0.459
pilD	Vibrio campbellii strain DS40M4	46.809	96.575	0.452
pilD	Acinetobacter baumannii D1279779	46.739	94.521	0.442