Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJB08_RS21480 Genome accession   NZ_CP124467
Coordinates   4414058..4414594 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain AVS0747     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4409058..4419594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJB08_RS21460 (QJB08_21460) soxR 4410787..4411251 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  QJB08_RS21465 (QJB08_21465) soxS 4411337..4411660 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QJB08_RS21470 (QJB08_21470) pdeC 4411663..4413249 (-) 1587 WP_001576468.1 c-di-GMP phosphodiesterase PdeC -
  QJB08_RS21475 (QJB08_21475) yjcB 4413678..4413959 (+) 282 WP_001296643.1 YjcB family protein -
  QJB08_RS21480 (QJB08_21480) ssb 4414058..4414594 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QJB08_RS21485 (QJB08_21485) uvrA 4414849..4417671 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  QJB08_RS21490 (QJB08_21490) yjbR 4417706..4418062 (-) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  QJB08_RS21495 (QJB08_21495) yjbQ 4418066..4418482 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QJB08_RS21500 (QJB08_21500) aphA 4418593..4419306 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=756946 QJB08_RS21480 WP_000168305.1 4414058..4414594(-) (ssb) [Escherichia coli strain AVS0747]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=756946 QJB08_RS21480 WP_000168305.1 4414058..4414594(-) (ssb) [Escherichia coli strain AVS0747]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489