Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI231_RS26250 Genome accession   NZ_AP021903
Coordinates   5840413..5840937 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas sp. Seg1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5835413..5845937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS26225 (PHLH6_51780) - 5835907..5836545 (+) 639 WP_103303756.1 DUF2491 family protein -
  KI231_RS26230 (PHLH6_51790) - 5836561..5836986 (+) 426 WP_103303757.1 DUF350 domain-containing protein -
  KI231_RS26235 (PHLH6_51800) - 5837004..5837696 (+) 693 WP_213026722.1 DUF1190 domain-containing protein -
  KI231_RS26240 (PHLH6_51810) - 5837699..5838856 (+) 1158 WP_213026723.1 glutathionylspermidine synthase family protein -
  KI231_RS26245 (PHLH6_51820) - 5838934..5840139 (-) 1206 WP_213026724.1 acyltransferase -
  KI231_RS26250 (PHLH6_51830) ssb 5840413..5840937 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  KI231_RS26255 (PHLH6_51840) - 5840947..5842344 (-) 1398 WP_103303761.1 MFS transporter -
  KI231_RS26260 (PHLH6_51850) uvrA 5842536..5845370 (+) 2835 WP_213026725.1 excinuclease ABC subunit UvrA -
  KI231_RS26265 (PHLH6_51860) bfr 5845436..5845900 (-) 465 WP_103303763.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=75694 KI231_RS26250 WP_008081898.1 5840413..5840937(-) (ssb) [Pseudomonas sp. Seg1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=75694 KI231_RS26250 WP_008081898.1 5840413..5840937(-) (ssb) [Pseudomonas sp. Seg1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTCGCCGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCCGCTCCGGCTC
CACGCCAGCAGGCTCCGCGTCCGCAGCAATCGGCTCCGCAACAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCACAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489

Multiple sequence alignment