Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KI231_RS25175 Genome accession   NZ_AP021903
Coordinates   5605795..5607138 (+) Length   447 a.a.
NCBI ID   WP_213026624.1    Uniprot ID   -
Organism   Pseudomonas sp. Seg1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5600795..5612138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI231_RS25150 (PHLH6_49630) pgeF 5601010..5601732 (-) 723 WP_213026622.1 peptidoglycan editing factor PgeF -
  KI231_RS25155 (PHLH6_49640) rluD 5601729..5602691 (-) 963 WP_103303582.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI231_RS25160 (PHLH6_49650) - 5602843..5603859 (+) 1017 WP_093434846.1 outer membrane protein assembly factor BamD -
  KI231_RS25165 - 5603986..5604219 (+) 234 WP_103303583.1 PP0621 family protein -
  KI231_RS25170 (PHLH6_49660) pilS 5604209..5605798 (+) 1590 WP_213026623.1 ATP-binding protein Regulator
  KI231_RS25175 (PHLH6_49670) pilR 5605795..5607138 (+) 1344 WP_213026624.1 sigma-54 dependent transcriptional regulator Regulator
  KI231_RS25180 (PHLH6_49680) thiO 5607266..5608366 (-) 1101 WP_213026625.1 glycine oxidase ThiO -
  KI231_RS25185 (PHLH6_49690) - 5608424..5608825 (-) 402 WP_103303587.1 type IV pilin protein -
  KI231_RS25190 (PHLH6_49700) - 5608841..5611924 (-) 3084 WP_213026626.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50084.47 Da        Isoelectric Point: 6.5130

>NTDB_id=75692 KI231_RS25175 WP_213026624.1 5605795..5607138(+) (pilR) [Pseudomonas sp. Seg1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLTEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALRMAAGGVSTTIDRRLLGDSLPMRNLRKQIDKLARSQAP
VYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVAD
LPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPSLRERRDDIEVLAA
HMLKRLAKDTGQPAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENRVIETEDLRLSEGNCAADGAIADLTQIDNL
EDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=75692 KI231_RS25175 WP_213026624.1 5605795..5607138(+) (pilR) [Pseudomonas sp. Seg1]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTGACGGAAGCCCAGGCGCTGTTGCACCGCGAAACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGTCTGGAGTTGGTACAGCACATCCAGCAACGTTATCCACAATTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTCGAAACGGCAATCAACGCGTTAAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGACCTGACCCGGCTGCGCGAACTGGTCGCAACGGCCCTGCGCATGGCGGCGGGAGGGGTTTCGACCACGATTG
ATCGACGGCTGCTGGGTGATTCATTGCCAATGCGTAATCTGCGCAAGCAAATCGACAAGCTCGCTCGCAGCCAGGCACCG
GTGTACATCAGCGGCGAATCCGGCAGTGGCAAAGAGTTGGTGGCGCGACTGATCCACGAACAAGGCCCGCGTGCCGGTCA
GCCATTCGTGCCGGTGAACTGCGGGGCGATTCCGTCGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCT
TCACCGGGGCTGTCGAGGACAAACCGGGGCTGTTTCAGGCCGCGCAGGGCGGCACACTGTTTCTTGATGAGGTGGCGGAC
TTGCCACTGTCGATGCAGGTGAAACTGCTGCGAGCAATTCAGGAGAAAGCCGTGCGCAGTGTGGGCGGTCAGCAGGAAAC
CGTGGTTGATGTGCGAATTCTCTGCGCAACCCACAAGGACCTCGATGCGGAGGTCACCGCCGAGCGCTTTCGCCAGGACC
TCTATTACCGTCTCAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGCGATGACATTGAAGTGCTGGCGGCG
CACATGCTCAAGCGCTTGGCCAAGGATACCGGCCAACCGGCGGCACGCCTGCATCCGCAGGCCCTGGAGGCACTGAAGAG
TTACCGCTTTCCAGGCAATGTGCGGGAACTGGAAAACGTCCTCGAGCGGGCACATACCTTGTGCGAGAACCGCGTGATCG
AGACTGAAGATCTACGATTGAGCGAGGGTAACTGCGCGGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAATCTG
GAAGATTATCTGGAGAACGTCGAACGCAAACTGATCTTGCAGGCACTGGAGGAAACCCGCTGGAACCGGACGGCGGCGGC
GCAGCGGTTGAGCCTGTCGTTCAGGTCGATGCGTTATCGCCTGAAAAAACTCGGTCTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

99.105

0.79
  pilR Acinetobacter baumannii strain A118

49.02

100

0.503
  luxO Vibrio cholerae strain A1552

37.923

99.105

0.376

Multiple sequence alignment